List of works - Deborah A Hogan

A Pseudomonas aeruginosa quorum-sensing molecule influences Candida albicans morphology

scientific article published in December 2004

ADAGE analysis of publicly available gene expression data collections illuminates Pseudomonas aeruginosa-host interactions

article

ADAGE signature analysis: differential expression analysis with data-defined gene sets

article

Absence of membrane phosphatidylcholine does not affect virulence and stress tolerance phenotypes in the opportunistic pathogen Pseudomonas aeruginosa

scientific journal article

Analysis of Candida albicans mutants defective in the Cdk8 module of mediator reveal links between metabolism and biofilm formation

scientific article (publication date: October 2014)

Analysis of the Candida albicans Phosphoproteome

scientific article published on 6 March 2015

Antifungal mechanisms by which a novel Pseudomonas aeruginosa phenazine toxin kills Candida albicans in biofilms

scientific article published on 18 October 2010

Bacterial type 6 secreted phospholipases play family feud

scientific article published on May 2013

Candida albicans developmental regulation: adenylyl cyclase as a coincidence detector of parallel signals

scientific article published on 17 October 2011

Candida albicans ethanol stimulates Pseudomonas aeruginosa WspR-controlled biofilm formation as part of a cyclic relationship involving phenazines.

scientific article

Candida albicans interactions with bacteria in the context of human health and disease

scientific article

Candida albicans-produced farnesol stimulates Pseudomonas quinolone signal production in LasR-defective Pseudomonas aeruginosa strains

scientific article

Candida albicans: Molecular interactions with Pseudomonas aeruginosa and Staphylococcus aureus

scientific article published in 2014

Candida spp. in Microbial Populations and Communities: Molecular Interactions and Biological Importance

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis

scientific article

Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics

scientific article published on 19 August 2020

Control of Candida albicans metabolism and biofilm formation by Pseudomonas aeruginosa phenazines.

scientific article published on 29 January 2013

Ethanol Stimulates Trehalose Production through a SpoT-DksA-AlgU-Dependent Pathway in Pseudomonas aeruginosa

scientific article published on 22 May 2019

Ethanol decreases Pseudomonas aeruginosa flagellar motility through a cyclic-di-GMP- and stator-dependent pathway

Ethanol decreases flagellar motility through the regulation of flagellar stators

scientific article published on 22 August 2019

Examination of Pseudomonas aeruginosa lasI regulation and 3-oxo-C12-homoserine lactone production using a heterologous Escherichia coli system.

scientific article published on 7 June 2007

Farnesol and cyclic AMP signaling effects on the hypha-to-yeast transition in Candida albicans

scientific article

Farnesol and dodecanol effects on the Candida albicans Ras1-cAMP signalling pathway and the regulation of morphogenesis

scientific article published on January 2008

Farnesol induces hydrogen peroxide resistance in Candida albicans yeast by inhibiting the Ras-cyclic AMP signaling pathway

scientific article published on 29 January 2010

Farnesol, a common sesquiterpene, inhibits PQS production in Pseudomonas aeruginosa.

scientific article published on 19 July 2007

Fungal--bacterial interactions: a mixed bag of mingling microbes

scientific article published on 13 June 2006

Fungal-Bacterial Interactions

GbdR regulates Pseudomonas aeruginosa plcH and pchP transcription in response to choline catabolites

scientific journal article

Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries

scientific article

Genetic Analysis of Family Transcription Factors in Using New CRISPR-Cas9 Approaches

scientific article published on 21 November 2018

Global regulator Anr represses PlcH phospholipase activity in Pseudomonas aeruginosa when oxygen is limiting

scientific journal article

Hemolytic phospholipase C inhibition protects lung function during Pseudomonas aeruginosa infection

scientific journal article

Identification of genes required for Pseudomonas aeruginosa carnitine catabolism

scientific journal article

Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism

scientific journal article

Interdomain Cross Talk

Intraspecies Signaling between Common Variants of Pseudomonas aeruginosa Increases Production of Quorum-Sensing-Controlled Virulence Factors

scientific article published on 25 August 2020

Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase

scientific article published in January 2003

Linking quorum sensing regulation and biofilm formation by Candida albicans

scientific article published in January 2011

Medically important bacterial-fungal interactions

scientific article published on 29 March 2010

Mixed bacterial-fungal infections in the CF respiratory tract

scientific article

Mrr1 regulation of methylglyoxal catabolism and methylglyoxal-induced fluconazole resistance in Candida lusitaniae

scientific article published on 14 December 2020

New Mitochondrial Targets in Fungal Pathogens

scientific article published on 01 October 2019

PEPped up: induction of Candida albicans virulence by bacterial cell wall fragments

scientific article published on July 2008

Part II Overview

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia

scholarly article published 8 June 2017

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia.

scientific article

Pearls collections: What we can learn about infectious disease and cancer.

scientific article

Pseudomonas aeruginosa Ethanol Oxidation by AdhA in Low-Oxygen Environments

scientific article published on 05 November 2019

Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin

scientific article published on 24 January 2020

Pseudomonas aeruginosa-Candida albicans interactions: localization and fungal toxicity of a phenazine derivative

scientific article published on 14 November 2008

Pseudomonas-Candida interactions: an ecological role for virulence factors

scientific article

Quorum sensing: alcohols in a social situation

scientific article

Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum

scientific article published on 26 November 2018

Regulated proteolysis of Candida albicans Ras1 is involved in morphogenesis and quorum sensing regulation

scientific article published on 10 June 2013

Roles of Ras1 membrane localization during Candida albicans hyphal growth and farnesol response

scientific article published on 9 September 2011

Roles of three transporters, CbcXWV, BetT1, and BetT3, in Pseudomonas aeruginosa choline uptake for catabolism

scientific journal article

Stereospecific degradation of the phenoxypropionate herbicide dichlorprop

Th2 allergic immune response to inhaled fungal antigens is modulated by TLR-4-independent bacterial products

scientific article published on March 2009

The ATP-binding cassette transporter Cbc (choline/betaine/carnitine) recruits multiple substrate-binding proteins with strong specificity for distinct quaternary ammonium compounds

scientific journal article

The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway

scientific article published on 04 January 2022

The Ras/cAMP/PKA signaling pathway and virulence in Candida albicans

scientific article published on December 2009

The Yin and Yang of Phenazine Physiology

The complex roles of NADPH oxidases in fungal infection

scientific article

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

scientific article

List of works by Deborah A Hogan

A Pseudomonas aeruginosa quorum-sensing molecule influences Candida albicans morphology

ADAGE analysis of publicly available gene expression data collections illuminates Pseudomonas aeruginosa-host interactions

ADAGE signature analysis: differential expression analysis with data-defined gene sets

Absence of membrane phosphatidylcholine does not affect virulence and stress tolerance phenotypes in the opportunistic pathogen Pseudomonas aeruginosa

Analysis of Candida albicans mutants defective in the Cdk8 module of mediator reveal links between metabolism and biofilm formation

Analysis of the Candida albicans Phosphoproteome

Antifungal mechanisms by which a novel Pseudomonas aeruginosa phenazine toxin kills Candida albicans in biofilms

Bacterial type 6 secreted phospholipases play family feud

Candida albicans developmental regulation: adenylyl cyclase as a coincidence detector of parallel signals

Candida albicans ethanol stimulates Pseudomonas aeruginosa WspR-controlled biofilm formation as part of a cyclic relationship involving phenazines.

Candida albicans interactions with bacteria in the context of human health and disease

Candida albicans-produced farnesol stimulates Pseudomonas quinolone signal production in LasR-defective Pseudomonas aeruginosa strains

Candida albicans: Molecular interactions with Pseudomonas aeruginosa and Staphylococcus aureus

Candida spp. in Microbial Populations and Communities: Molecular Interactions and Biological Importance

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis

Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics

Control of Candida albicans metabolism and biofilm formation by Pseudomonas aeruginosa phenazines.

Ethanol Stimulates Trehalose Production through a SpoT-DksA-AlgU-Dependent Pathway in Pseudomonas aeruginosa

Ethanol decreases Pseudomonas aeruginosa flagellar motility through a cyclic-di-GMP- and stator-dependent pathway

Ethanol decreases flagellar motility through the regulation of flagellar stators

Examination of Pseudomonas aeruginosa lasI regulation and 3-oxo-C12-homoserine lactone production using a heterologous Escherichia coli system.

Farnesol and cyclic AMP signaling effects on the hypha-to-yeast transition in Candida albicans

Farnesol and dodecanol effects on the Candida albicans Ras1-cAMP signalling pathway and the regulation of morphogenesis

Farnesol induces hydrogen peroxide resistance in Candida albicans yeast by inhibiting the Ras-cyclic AMP signaling pathway

Farnesol, a common sesquiterpene, inhibits PQS production in Pseudomonas aeruginosa.

Fungal--bacterial interactions: a mixed bag of mingling microbes

Fungal-Bacterial Interactions

GbdR regulates Pseudomonas aeruginosa plcH and pchP transcription in response to choline catabolites

Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries

Genetic Analysis of Family Transcription Factors in Using New CRISPR-Cas9 Approaches

Global regulator Anr represses PlcH phospholipase activity in Pseudomonas aeruginosa when oxygen is limiting

Hemolytic phospholipase C inhibition protects lung function during Pseudomonas aeruginosa infection

Identification of genes required for Pseudomonas aeruginosa carnitine catabolism

Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism

Interdomain Cross Talk

Intraspecies Signaling between Common Variants of Pseudomonas aeruginosa Increases Production of Quorum-Sensing-Controlled Virulence Factors

Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase

Linking quorum sensing regulation and biofilm formation by Candida albicans

Medically important bacterial-fungal interactions

Mixed bacterial-fungal infections in the CF respiratory tract

Mrr1 regulation of methylglyoxal catabolism and methylglyoxal-induced fluconazole resistance in Candida lusitaniae

New Mitochondrial Targets in Fungal Pathogens

PEPped up: induction of Candida albicans virulence by bacterial cell wall fragments

Part II Overview

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia.

Pearls collections: What we can learn about infectious disease and cancer.

Pseudomonas aeruginosa Ethanol Oxidation by AdhA in Low-Oxygen Environments

Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin

Pseudomonas aeruginosa-Candida albicans interactions: localization and fungal toxicity of a phenazine derivative

Pseudomonas-Candida interactions: an ecological role for virulence factors

Quorum sensing: alcohols in a social situation

Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum

Regulated proteolysis of Candida albicans Ras1 is involved in morphogenesis and quorum sensing regulation

Roles of Ras1 membrane localization during Candida albicans hyphal growth and farnesol response

Roles of three transporters, CbcXWV, BetT1, and BetT3, in Pseudomonas aeruginosa choline uptake for catabolism

Stereospecific degradation of the phenoxypropionate herbicide dichlorprop

Th2 allergic immune response to inhaled fungal antigens is modulated by TLR-4-independent bacterial products

The ATP-binding cassette transporter Cbc (choline/betaine/carnitine) recruits multiple substrate-binding proteins with strong specificity for distinct quaternary ammonium compounds

The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway

The Ras/cAMP/PKA signaling pathway and virulence in Candida albicans

The Yin and Yang of Phenazine Physiology

The complex roles of NADPH oxidases in fungal infection

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

Unsupervised extraction of stable expression signatures from public compendia with eADAGE