List of works - Fabio Luciani

A bioinformatics pipeline for the analyses of viral escape dynamics and host immune responses during an infection

scientific article

A mathematical model of protein degradation by the proteasome

scientific article published on 21 January 2005

A prospective study of hepatitis C incidence in Australian prisoners

scientific article published on 15 July 2014

A stochastic model for CD8(+)T cell dynamics in human immunosenescence: implications for survival and longevity

article

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

scientific article

Contribution of intra- and interhost dynamics to norovirus evolution

scientific article published on 28 December 2011

Current understanding on the role of standard and immunoproteasomes in inflammatory/immunological pathways of multiple sclerosis

scientific article published on 02 January 2014

Effects and interactions in an environmentally relevant mixture of pharmaceuticals

scientific article published on 28 November 2007

Epidemiological and clinical consequences of within-host evolution

scientific article

Evidence that hepatitis C virus genome partly controls infection outcome.

scientific article

Exploration of genetically determined resistance against hepatitis C infection in high-risk injecting drug users.

scientific article published on 26 February 2014

Exploring and analysing single cell multi-omics data with VDJView

scientific article published on 18 February 2020

GemSIM: general, error-model based simulator of next-generation sequencing data

scientific article

HIV infection and hepatitis C virus genotype 1a are associated with phylogenetic clustering among people with recently acquired hepatitis C virus infection.

scientific article published on 26 November 2015

Incidence of primary hepatitis C infection and risk factors for transmission in an Australian prisoner cohort

scientific article published on 22 October 2010

Increasing viral dose causes a reversal in CD8+ T cell immunodominance during primary influenza infection due to differences in antigen presentation, T cell avidity, and precursor numbers.

scientific article

Inhibitors of the Hepatitis C Virus Polymerase; Mode of Action and Resistance

scientific article

Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping

scientific article published on 01 February 2008

Modeling the in vitro 20S proteasome activity: the effect of PA28-alphabeta and of the sequence and length of polypeptides on the degradation kinetics

scientific article published on 8 February 2008

Naturally occurring dominant drug resistance mutations occur infrequently in the setting of recently acquired hepatitis C.

scientific article

Next generation deep sequencing and vaccine design: today and tomorrow

scientific article published on 20 June 2012

Per-event probability of hepatitis C infection during sharing of injecting equipment

scientific article (publication date: 2014)

Resistance to hepatitis C virus: potential genetic and immunological determinants.

scientific article

Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

scientific article

Short duration of lamivudine for the prevention of hepatitis B virus transmission in pregnancy: lack of potency and selection of resistance mutations.

scientific article published on 11 December 2013

Single nucleotide polymorphism array profiling identifies distinct chromosomal aberration patterns across colorectal adenomas and carcinomas

scientific article

The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus

scientific article (publication date: November 2009)

The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis.

scholarly article

Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus

scientific article published on 29 September 2010

Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection

scientific article published on 4 March 2015

Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data

scientific article

Viral quasispecies assembly via maximal clique enumeration

scientific article (publication date: March 2014)

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex

scientific article published on 18 August 2008

List of works by Fabio Luciani

A bioinformatics pipeline for the analyses of viral escape dynamics and host immune responses during an infection

A mathematical model of protein degradation by the proteasome

A prospective study of hepatitis C incidence in Australian prisoners

A stochastic model for CD8(+)T cell dynamics in human immunosenescence: implications for survival and longevity

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

Contribution of intra- and interhost dynamics to norovirus evolution

Current understanding on the role of standard and immunoproteasomes in inflammatory/immunological pathways of multiple sclerosis

Effects and interactions in an environmentally relevant mixture of pharmaceuticals

Epidemiological and clinical consequences of within-host evolution

Evidence that hepatitis C virus genome partly controls infection outcome.

Exploration of genetically determined resistance against hepatitis C infection in high-risk injecting drug users.

Exploring and analysing single cell multi-omics data with VDJView

GemSIM: general, error-model based simulator of next-generation sequencing data

HIV infection and hepatitis C virus genotype 1a are associated with phylogenetic clustering among people with recently acquired hepatitis C virus infection.

Incidence of primary hepatitis C infection and risk factors for transmission in an Australian prisoner cohort

Increasing viral dose causes a reversal in CD8+ T cell immunodominance during primary influenza infection due to differences in antigen presentation, T cell avidity, and precursor numbers.

Inhibitors of the Hepatitis C Virus Polymerase; Mode of Action and Resistance

Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping

Modeling the in vitro 20S proteasome activity: the effect of PA28-alphabeta and of the sequence and length of polypeptides on the degradation kinetics

Naturally occurring dominant drug resistance mutations occur infrequently in the setting of recently acquired hepatitis C.

Next generation deep sequencing and vaccine design: today and tomorrow

Per-event probability of hepatitis C infection during sharing of injecting equipment

Resistance to hepatitis C virus: potential genetic and immunological determinants.

Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

Short duration of lamivudine for the prevention of hepatitis B virus transmission in pregnancy: lack of potency and selection of resistance mutations.

Single nucleotide polymorphism array profiling identifies distinct chromosomal aberration patterns across colorectal adenomas and carcinomas

The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus

The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis.

Trade-offs in resource allocation in the intracellular life-cycle of hepatitis C virus

Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection

Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data

Viral quasispecies assembly via maximal clique enumeration

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex