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List of works by Hakim Tafer

Amid the possible causes of a very famous foxing: molecular and microscopic insight into Leonardo da Vinci's self-portrait

scientific article

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Animal snoRNAs and scaRNAs with exceptional structures

scientific article published on November 2011

Atypical RNAs in the coelacanth transcriptome

scientific article published on 30 October 2013

Big Sound and Extreme Fungi-Xerophilic, Halotolerant Aspergilli and Penicillia with Low Optimal Temperature as Invaders of Historic Pipe Organs.

scientific article published on 14 June 2018

Bioinformatics of siRNA design

scientific article published on January 2014

Designing optimal siRNA based on target site accessibility

scientific article published in January 2010

Developmentally regulated expression and expression strategies of Drosophila snoRNAs

scientific article published on 29 January 2015

Draft Genome Sequence of Exophiala mesophila, a Black Yeast with High Bioremediation Potential.

scientific article published on 9 April 2015

Draft Genome Sequence of the Interspecies Hybrid Saccharomyces pastorianus Strain HA2560, Isolated from a Municipal Wastewater Treatment Plant.

scientific article published on 26 April 2018

Draft Genome Sequence of the Saccharomyces cerevisiae × Saccharomyces kudriavzevii HA1836 Interspecies Hybrid Yeast.

scientific article

Draft Genome Sequences of the Black Rock Fungus Knufia petricola and Its Spontaneous Nonmelanized Mutant

scientific article published on 2 November 2017

Draft Genome of Cladophialophora immunda, a Black Yeast and Efficient Degrader of Polyaromatic Hydrocarbons.

scientific article published on 29 January 2015

Draft Genome of Debaryomyces fabryi CBS 789T, Isolated from a Human Interdigital Mycotic Lesion.

scientific article

Fast accessibility-based prediction of RNA-RNA interactions

scientific article published on 18 May 2011

From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response

scientific article published on 10 June 2015

Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAs

scientific article

Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies

scientific article

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

scientific article

Genomic and transcriptomic analysis of the toluene degrading black yeast Cladophialophora immunda.

scientific article published on 12 September 2017

Invertebrate 7SK snRNAs.

scientific article published on 12 January 2008

Matching of Soulmates: coevolution of snoRNAs and their targets

scientific article published on 24 October 2013

MicroRNA or Not MicroRNA?

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

scientific article published in 2010

Non-coding RNA annotation of the genome of Trichoplax adhaerens

scientific article published on 16 January 2009

Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX).

scientific article published in February 2004

PLEXY: efficient target prediction for box C/D snoRNAs

scientific article

Partition function and base pairing probabilities of RNA heterodimers

scientific article

Pathogenic Yet Environmentally Friendly? Black Fungal Candidates for Bioremediation of Pollutants.

scientific article

Protein functional analysis data in support of comparative proteomics of the pathogenic black yeast Exophiala dermatitidis under different temperature conditions

scientific article

Proteome of tolerance fine-tuning in the human pathogen black yeast Exophiala dermatitidis.

scientific article published on 16 July 2015

Quantification of fungal abundance on cultural heritage using real time PCR targeting the β-actin gene

scientific article

RNAplex: a fast tool for RNA-RNA interaction search

scientific article published on 23 April 2008

RNApredator: fast accessibility-based prediction of sRNA targets

scientific article

RNAsnoop: efficient target prediction for H/ACA snoRNAs

scientific article published on 16 December 2009

RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced bySNPs.

scientific article published on 15 March 2013

RNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs

scientific article

Structured RNAs and synteny regions in the pig genome

scientific article

Target site effects in the RNA interference and microRNA pathways

scientific article published on 01 December 2008

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The RNAsnp web server: predicting SNP effects on local RNA secondary structure

scientific article published on 29 April 2013

The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection

scientific article published on 24 October 2016

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

scientific article

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

scientific article

The impact of target site accessibility on the design of effective siRNAs

scientific article published on 27 April 2008

Thermodynamics of RNA-RNA binding

scientific article

Transcriptome Study of an Mutant on an Skin Model: Is Melanin Important for Infection?

scientific article published on 03 July 2018

Unusual Novel SnoRNA-Like RNAs in Drosophila melanogaster.

scientific article published on 13 July 2015

ViennaRNA Package 2.0

scientific article

snoStrip: a snoRNA annotation pipeline

scientific article published on 29 October 2013

www.rnaworkbench.com: A new program for analyzing RNA interference

scientific article published on 22 January 2008

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