List of works - Chris Barnes

A Bayesian framework for the analysis of systems biology models of the brain.

scientific article published on 26 April 2019

A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators

scientific article published on 2 February 2016

A computational method for the investigation of multistable systems and its application to genetic switches

scientific article

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

scientific article

A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose

scientific article

A robust statistical method for case-control association testing with copy number variation

scientific article published on 07 September 2008

A theoretical framework for the regulation of Shh morphogen-controlled gene expression

scientific article

ABC-SysBio--approximate Bayesian computation in Python with GPU support

scientific article

An acetoacetate-inducible bacterial sensor

Arterial thromboembolic disease: A single-centre case series study

scientific article published on 04 September 2007

Assessing the Outcome of Systemic Tissue Plasminogen Activator for the Management of Venous and Arterial Thrombosis in Pediatrics

scientific article published on 01 April 2007

Author Correction: Quantification of subclonal selection in cancer from bulk sequencing data

scientific article published on 01 September 2018

Automated design of synthetic microbial communities

scientific article published on 28 January 2021

Bayesian design of synthetic biological systems

scientific article

Bayesian design strategies for synthetic biology

scientific article published on 5 October 2011

Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation

scientific article

Catch my drift? Making sense of genomic intra-tumour heterogeneity

scientific article published on 6 January 2017

Change in serum procalcitonin (DeltaPct) predicts the clinical outcome of children admitted with febrile neutropenia

scientific article published on 01 September 2002

Clinical drug resistance linked to interconvertible phenotypic and functional states of tumor-propagating cells in multiple myeloma.

scientific article published on 20 November 2012

Combined D0 measurements constraining theCP-violating phase and width difference in theBs0system

scholarly article

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

scientific article published on 12 March 2018

Computational design approaches and tools for synthetic biology

scientific article published on 24 January 2011

Correction to "FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data"

scientific article published on 07 January 2021

Crypt fusion as a homeostatic mechanism in the human colon

scientific article published on 14 March 2019

Deep reinforcement learning for the control of microbial co-cultures in bioreactors

scientific article published on 10 April 2020

Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

scientific article published on 04 October 2011

Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor

scientific article published on 08 November 2019

Direct Limits on the B s 0 Oscillation Frequency

scientific article (publication date: 14 July 2006)

Directional collective cell migration emerges as a property of cell interactions

scientific article

Erratum to: “Search for particles decaying into a Z boson and a photon in p p ¯ collisions at s = 1.96 TeV ” [Phys. Lett. B 641 (2006) 415]

scholarly article published in Physics Letters B

Erratum: Measurement of Inclusive Differential Cross Sections forΥ(1S)Production inpp¯Collisions ats=1.96 TeV[Phys. Rev. Lett.94, 232001 (2005)]

scientific article published in Physical Review Letters

Erratum: Measurement of theWWProduction Cross Section inpp¯Collisions ats=1.96 TeV[Phys. Rev. Lett.94, 151801 (2005)]

scientific article published in Physical Review Letters

Erratum: Measurement ofσ(pp¯→Z)·Br(Z→ττ)ats=1.96 TeV[Phys. Rev. D71, 072004 (2005)]

scholarly article published in Physical Review D

Evidence for Production of Single Top Quarks and First Direct Measurement of | V t b |

scientific article

Evolutionary dynamics of neoantigens in growing tumors

scientific article published on 14 September 2020

Executive Function Following Child Stroke: The Impact of Lesion Location

scientific article published on 29 November 2010

Executive function following child stroke: the impact of lesion size

scientific article published in January 2011

Experimental Discrimination between Charge 2 e / 3 Top Quark and Charge 4 e / 3 Exotic Quark Production Scenarios

scientific article

Founder population-specific HapMap panel increases power in GWA studies through improved imputation accuracy and CNV tagging

scientific article

GPU accelerated biochemical network simulation

scientific article

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

scientific article

Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits

scientific journal article

Identification of neutral tumor evolution across cancer types.

scientific article published on 18 January 2016

Independent estimation of the frequency of rare CNVs in the UK population confirms their role in schizophrenia

scientific article published on 29 November 2011

Integrating common and rare genetic variation in diverse human populations

scientific article (publication date: 2 September 2010)

Lifetime Difference andCP-Violating Phase in theBs0System

scientific article published in Physical Review Letters

Limits on anomalous trilinear gauge couplings fromWW→e+e−,WW→e±μ∓, andWW→μ+μ−events frompp¯collisions ats=1.96 TeV

scholarly article

Mathematical models help explain experimental data. Response to 'Transcriptional interpretation of Shh morphogen signaling: computational modeling validates empirically established models'.

scientific article published in May 2016

Measurement of B ( t → W b ) / B ( t → W q ) at s = 1.96 TeV

Measurement of Inclusive Differential Cross Sections forΥ(1S)Production inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Measurement of Semileptonic Branching Fractions ofBMesons to NarrowD**States

scientific article published in Physical Review Letters

Measurement of dijet azimuthal decorrelations at central rapidities in pp collisions at sqrt s =1.96 TeV.

scientific article published on 7 June 2005

Measurement of the B0s lifetime in the exclusive decay channel B0s-->J/psiphi

scientific article published on 2 February 2005

Measurement of the Bs(0) lifetime using semileptonic decays

scientific article (publication date: 12 December 2006)

Measurement of the Charge Asymmetry in SemileptonicBs0Decays

scientific article published in Physical Review Letters

Measurement of the Lifetime Difference in theBs0System

scientific article published in Physical Review Letters

Measurement of the Ratio of Inclusive Cross Sectionsσ(pp¯→Z+b jet)/σ(pp¯→Z+jet)ats=1.96 TeV

scientific article published in Physical Review Letters

Measurement of the Ratio ofB+andB0Meson Lifetimes

scientific article published in Physical Review Letters

Measurement of the isolated photon cross section in p p ¯ collisions at s = 1.96 TeV

article by Victor Mukhamedovich Abazov et al published August 2006 in Physics Letters B

Measurement of the ratios of the Z / γ ∗ + ⩾ n jet production cross sections to the total inclusive Z / γ ∗ cross section in p p ¯ collisions at s = 1.96 TeV

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV in dilepton final states

article by Victor Mukhamedovich Abazov et al published October 2005 in Physics Letters B

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV using kinematic characteristics of lepton+jets events

article by Victor Mukhamedovich Abazov et al published October 2005 in Physics Letters B

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV using lepton+jets events with lifetime b-tagging

article by Victor Mukhamedovich Abazov et al published October 2005 in Physics Letters B

Measurement of the top quark mass in the dilepton channel

article by Victor Mukhamedovich Abazov et al published October 2007 in Physics Letters B

Measurement of the top quark mass in the lepton+jets final state with the matrix element method

article by Victor Mukhamedovich Abazov et al published 27 November 2006 in Physical Review D

Measurement of theCP-violation parameter ofB0mixing and decay withpp¯→μμXdata

article by Victor Mukhamedovich Abazov et al published 13 November 2006 in Physical Review D

Measurement of theWWProduction Cross Section inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Measurement of theWboson helicity in top quark decays at D0

scholarly article

Measurement of thepp¯→Wγ+Xcross section ats=1.96 TeV andWWγanomalous coupling limits

scholarly article

Measurement of thepp¯→tt¯+Xproduction cross section ats=1.96 TeVin the fully hadronic decay channel

scholarly article

Measurement of thett¯production cross section inpp¯collisions ats=1.96 TeVusing secondary vertexbtagging

article by Victor Mukhamedovich Abazov et al published 26 December 2006 in Physical Review D

Measurement of theΛb0Lifetime in the DecayΛb0→J/ψΛ0with the D0 Detector

scientific article published in Physical Review Letters

Measurement ofBdmixing using opposite-side flavor tagging

article by Victor Mukhamedovich Abazov et al published 15 December 2006 in Physical Review D

Measurement ofσ(pp¯→Z)·Br(Z→ττ)ats=1.96 TeV

scholarly article

Measuring single cell divisions in human tissues from multi-region sequencing data

scientific article published on 25 February 2020

Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios

scientific article published on 30 March 2020

Mechanistic Modelling and Bayesian Inference Elucidates the Variable Dynamics of Double-Strand Break Repair.

scientific article

Mechanistic modelling and Bayesian inference elucidates the variable dynamics of double-strand break repair

article

Model selection in systems biology depends on experimental design

scientific article

Multivariate searches for single top quark production with the D0 detector

scholarly article

Observation and properties of the X(3872) decaying to J/psipi(+)pi(-) in pp collisions at sqrt[s]=1.96 TeV

scientific article

On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo

scientific article published on 26 March 2013

Origins and functional impact of copy number variation in the human genome

scientific article (publication date: April 2010)

Phenotypic plasticity and genetic control in colorectal cancer evolution

scientific article published in 2022

Production ofWZEvents inpp¯Collisions ats=1.96 TeVand Limits on AnomalousWWZCouplings

scientific article published in Physical Review Letters

Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms

scientific article

Quantification of subclonal selection in cancer from bulk sequencing data

scientific article published on 28 May 2018

Reciprocal duplication of the Williams-Beuren syndrome deletion on chromosome 7q11.23 is associated with schizophrenia

scientific article published on 17 July 2013

Reconstructing single-cell karyotype alterations in colorectal cancer identifies punctuated and gradual diversification patterns

scientific article published on 01 July 2021

Reduced bone density in children on long-term warfarin

scientific article

Reduced burden of very large and rare CNVs in bipolar affective disorder

scientific article published on 16 October 2013

Reply to ‘Revisiting signatures of neutral tumor evolution in the light of complexity of cancer genomic data’

scientific article published on 01 December 2018

Reply: Is the evolution of tumors Darwinian or non-Darwinian?

Reply: Neutral tumor evolution?

Reply: Uncertainties in tumor allele frequencies limit power to infer evolutionary pressures

scientific article published in August 2017

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling.

scientific article published on June 2016

SMN1 gene duplications are associated with sporadic ALS.

scientific article published on 8 February 2012

Search for Associated Higgs Boson ProductionWH→WWW*→l±νl′±ν′+Xinpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Search for Large Extra Spatial Dimensions in Dimuon Production with the D0 Detector

scientific article published in Physical Review Letters

Search for Neutral Higgs Bosons Decaying to Tau Pairs inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Search for Neutral Supersymmetric Higgs Bosons in Multijet Events ats=1.96 TeV

scientific article published in Physical Review Letters

Search for Neutral, Long-Lived Particles Decaying into Two Muons inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Search for Pair Production of Scalar Bottom Quarks inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Search for R-parity violating supersymmetry via the L L E ¯ couplings λ 121 , λ 122 or λ 133 in p p ¯ collisions at s = 1.96 TeV

article by Victor Mukhamedovich Abazov et al published July 2006 in Physics Letters B

Search for Randall-Sundrum Gravitons in Dilepton and Diphoton Final States

scientific article published in Physical Review Letters

Search for Resonant Second Generation Slepton Production at the Fermilab Tevatron

scientific article published in Physical Review Letters

Search for Supersymmetry via Associated Production of Charginos and Neutralinos in Final States with Three Leptons

scientific article published in Physical Review Letters

Search for Techniparticles ine+jetsEvents at D0

scientific article published in Physical Review Letters

Search for W ′ boson production in the W ′ → t b ¯ decay channel

Search for a heavy resonance decaying into aZ+jetfinal state inpp¯collisions ats=1.96 TeVusing the D0 detector

scholarly article

Search for anomalous heavy-flavor quark production in association with W bosons.

scientific article published on 22 April 2005

Search for doubly charged higgs boson pair production in the decay to mu(+)mu(+)mu(-)mu(-) in pp collisions at sqrt[s]=1.96 TeV.

scientific article published on 27 September 2004

Search for excited muons inpp¯collisions ats=1.96 TeV

scholarly article

Search for first-generation scalar leptoquarks inpp¯collisions ats=1.96 TeV

scholarly article

Search for pair production of second generation scalar leptoquarks in p p ¯ collisions at s = 1.96 TeV

Search for particles decaying into a Z boson and a photon in p p ¯ collisions at s = 1.96 TeV

Search for production of single top quarks via tcg and tug flavor-changing-neutral-current couplings.

scientific article published on 6 November 2007

Search for right-handedWbosons in top quark decay

article by Victor Mukhamedovich Abazov et al published 29 July 2005 in Physical Review D

Search for scalar leptoquarks in the acoplanar jet topology in p p ¯ collisions at s = 1.96 TeV

Search for single production of scalar leptoquarks in p p ¯ collisions decaying into muons and quarks with the D0 detector

Search for single top quark production in p p ¯ collisions at s = 1.96 TeV

Search for squarks and gluinos in events with jets and missing transverse energy in p p ¯ collisions at s = 1.96 TeV

Search for supersymmetry with gauge-mediated breaking in diphoton events at D0.

scientific article published on 31 January 2005

Search for the Flavor-Changing Neutral Current DecayBs0→μ+μ−inpp¯Collisions ats=1.96 TeVwith the D0 Detector

scientific article published in Physical Review Letters

Search for the Higgs Boson inH→WW(*)Decays inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Search for the Standard Model Higgs Boson in thepp¯→ZH→νν¯bb¯Channel

scientific article published in Physical Review Letters

Search for the pair production of scalar top quarks in the acoplanar charm jet final state in collisions at

article by Victor Mukhamedovich Abazov et al published February 2007 in Physics Letters B

Search for the rare decayBs0→ϕμ+μ−with the D0 detector

scholarly article

Search forWbb¯andWHProduction inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Study ofZγEvents and Limits on AnomalousZZγandZγγCouplings inpp¯Collisions ats=1.96 TeV

scientific article published in Physical Review Letters

Subclonal reconstruction of tumors by using machine learning and population genetics

scientific article published on 02 September 2020

Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity

scientific article published on 01 July 2018

The LHCb Detector at the LHC

scientific article

The upgraded DØ detector

article

Three-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Polarization Analysis

article

Three‐YearWilkinson Microwave Anisotropy Probe(WMAP) Observations: Beam Profiles, Data Processing, Radiometer Characterization, and Systematic Error Limits

Thromboembolic complications related to indwelling central venous catheters in children with oncological/haematological diseases: a retrospective study of 362 catheters

scientific article published on 14 February 2002

Towards an Aspect-Oriented Design and Modelling Framework for Synthetic Biology

scholarly article by Philipp Boeing et al published 15 September 2018 in Processes (Basel, Switzerland)

Two New Plasmid Post-segregational Killing Mechanisms for the Implementation of Synthetic Gene Networks in Escherichia coli

article

Venous thromboembolic disease: A single-centre case series study

scientific article published on 01 December 2006

List of works by Chris Barnes

A Bayesian framework for the analysis of systems biology models of the brain.

A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators

A computational method for the investigation of multistable systems and its application to genetic switches

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose

A robust statistical method for case-control association testing with copy number variation

A theoretical framework for the regulation of Shh morphogen-controlled gene expression

ABC-SysBio--approximate Bayesian computation in Python with GPU support

An acetoacetate-inducible bacterial sensor

Arterial thromboembolic disease: A single-centre case series study

Assessing the Outcome of Systemic Tissue Plasminogen Activator for the Management of Venous and Arterial Thrombosis in Pediatrics

Author Correction: Quantification of subclonal selection in cancer from bulk sequencing data

Automated design of synthetic microbial communities

Bayesian design of synthetic biological systems

Bayesian design strategies for synthetic biology

Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation

Catch my drift? Making sense of genomic intra-tumour heterogeneity

Change in serum procalcitonin (DeltaPct) predicts the clinical outcome of children admitted with febrile neutropenia

Clinical drug resistance linked to interconvertible phenotypic and functional states of tumor-propagating cells in multiple myeloma.

Combined D0 measurements constraining theCP-violating phase and width difference in theBs0system

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

Computational design approaches and tools for synthetic biology

Correction to "FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data"

Crypt fusion as a homeostatic mechanism in the human colon

Deep reinforcement learning for the control of microbial co-cultures in bioreactors

Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor

Direct Limits on the B s 0 Oscillation Frequency

Directional collective cell migration emerges as a property of cell interactions

Erratum to: “Search for particles decaying into a Z boson and a photon in p p ¯ collisions at s = 1.96 TeV ” [Phys. Lett. B 641 (2006) 415]

Erratum: Measurement of Inclusive Differential Cross Sections forΥ(1S)Production inpp¯Collisions ats=1.96 TeV[Phys. Rev. Lett.94, 232001 (2005)]

Erratum: Measurement of theWWProduction Cross Section inpp¯Collisions ats=1.96 TeV[Phys. Rev. Lett.94, 151801 (2005)]

Erratum: Measurement ofσ(pp¯→Z)·Br(Z→ττ)ats=1.96 TeV[Phys. Rev. D71, 072004 (2005)]

Evidence for Production of Single Top Quarks and First Direct Measurement of | V t b |

Evolutionary dynamics of neoantigens in growing tumors

Executive Function Following Child Stroke: The Impact of Lesion Location

Executive function following child stroke: the impact of lesion size

Experimental Discrimination between Charge 2 e / 3 Top Quark and Charge 4 e / 3 Exotic Quark Production Scenarios

Founder population-specific HapMap panel increases power in GWA studies through improved imputation accuracy and CNV tagging

GPU accelerated biochemical network simulation

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits

Identification of neutral tumor evolution across cancer types.

Independent estimation of the frequency of rare CNVs in the UK population confirms their role in schizophrenia

Integrating common and rare genetic variation in diverse human populations

Lifetime Difference andCP-Violating Phase in theBs0System

Limits on anomalous trilinear gauge couplings fromWW→e+e−,WW→e±μ∓, andWW→μ+μ−events frompp¯collisions ats=1.96 TeV

Mathematical models help explain experimental data. Response to 'Transcriptional interpretation of Shh morphogen signaling: computational modeling validates empirically established models'.

Measurement of B ( t → W b ) / B ( t → W q ) at s = 1.96 TeV

Measurement of Inclusive Differential Cross Sections forΥ(1S)Production inpp¯Collisions ats=1.96 TeV

Measurement of Semileptonic Branching Fractions ofBMesons to NarrowD**States

Measurement of dijet azimuthal decorrelations at central rapidities in pp collisions at sqrt s =1.96 TeV.

Measurement of the B0s lifetime in the exclusive decay channel B0s-->J/psiphi

Measurement of the Bs(0) lifetime using semileptonic decays

Measurement of the Charge Asymmetry in SemileptonicBs0Decays

Measurement of the Lifetime Difference in theBs0System

Measurement of the Ratio of Inclusive Cross Sectionsσ(pp¯→Z+b jet)/σ(pp¯→Z+jet)ats=1.96 TeV

Measurement of the Ratio ofB+andB0Meson Lifetimes

Measurement of the isolated photon cross section in p p ¯ collisions at s = 1.96 TeV

Measurement of the ratios of the Z / γ ∗ + ⩾ n jet production cross sections to the total inclusive Z / γ ∗ cross section in p p ¯ collisions at s = 1.96 TeV

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV in dilepton final states

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV using kinematic characteristics of lepton+jets events

Measurement of the t t ¯ production cross section in p p ¯ collisions at s = 1.96 TeV using lepton+jets events with lifetime b-tagging

Measurement of the top quark mass in the dilepton channel

Measurement of the top quark mass in the lepton+jets final state with the matrix element method

Measurement of theCP-violation parameter ofB0mixing and decay withpp¯→μμXdata

Measurement of theWWProduction Cross Section inpp¯Collisions ats=1.96 TeV

Measurement of theWboson helicity in top quark decays at D0

Measurement of thepp¯→Wγ+Xcross section ats=1.96 TeV andWWγanomalous coupling limits

Measurement of thepp¯→tt¯+Xproduction cross section ats=1.96 TeVin the fully hadronic decay channel

Measurement of thett¯production cross section inpp¯collisions ats=1.96 TeVusing secondary vertexbtagging

Measurement of theΛb0Lifetime in the DecayΛb0→J/ψΛ0with the D0 Detector

Measurement ofBdmixing using opposite-side flavor tagging

Measurement ofσ(pp¯→Z)·Br(Z→ττ)ats=1.96 TeV

Measuring single cell divisions in human tissues from multi-region sequencing data

Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios

Mechanistic Modelling and Bayesian Inference Elucidates the Variable Dynamics of Double-Strand Break Repair.

Mechanistic modelling and Bayesian inference elucidates the variable dynamics of double-strand break repair

Model selection in systems biology depends on experimental design