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List of works by Chris Haley

"Arte et Labore"-A Blackburn Rovers fan's legacy in human complex trait genetics

scientific article published on 01 July 2019

A Combined Pathway and Regional Heritability Analysis Indicates NETRIN1 Pathway Is Associated With Major Depressive Disorder

scientific article published on 02 May 2016

A QTL affecting daily feed intake maps to Chromosome 2 in pigs

scientific article published in June 2005

A combined strategy for quantitative trait loci detection by genome-wide association

scientific article

A comparison of rate and uniformity of embryo development in Meishan and European white pigs

scientific article published in May 1992

A cornucopia of maize genes

scientific article published on February 1, 2011

A genetic and cytogenetic map for the duck (Anas platyrhynchos).

scientific article published in March 2006

A genome-wide linkage analysis for reproductive traits in F2 Large White × Meishan cross gilts

scientific article

A linkage map of the porcine genome from a large-scale White Duroc x Erhualian resource population and evaluation of factors affecting recombination rates

scientific article published in February 2009

A microsatellite linkage map of the European sea bass Dicentrarchus labrax L

scientific article

A polymorphism in the 5'-untranslated region of the porcine cholecystokinin type a receptor gene affects feed intake and growth.

scientific article

A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig.

scientific article published in October 2003

A simple and rapid method for calculating identity-by-descent matrices using multiple markers

scientific article

Abundant local interactions in the 4p16.1 region suggest functional mechanisms underlying SLC2A9 associations with human serum uric acid

scientific article

Addendum: Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways

scientific article published in Nature Communications

An actionable KCNH2 Long QT Syndrome variant detected by sequence and haplotype analysis in a population research cohort

scientific article published on 29 July 2019

An empirical assessment of individual-based population genetic statistical techniques: application to British pig breeds

scientific article published on 16 June 2010

An evolutionary perspective on epistasis and the missing heritability

scientific article

Analysis of the genetics of boar taint reveals both single SNPs and regional effects

scientific article

Antagonistic genetic correlations for milking traits within the genome of dairy cattle

scientific article

Application of high-dimensional feature selection: evaluation for genomic prediction in man

scientific article

Assessment of SULT1A1, CYP2A6 and CYP2C18 as candidate genes for elevated backfat skatole levels in commercial and experimental pig populations

article

Association analyses of the MAS-QTL data set using grammar, principal components and Bayesian network methodologies.

scientific article

Associations of autozygosity with a broad range of human phenotypes

scientific article published on 31 October 2019

Author Correction: Bayesian reassessment of the epigenetic architecture of complex traits

scientific article published on 09 October 2020

Bayesian reassessment of the epigenetic architecture of complex traits

scientific article published on 08 June 2020

BiForce Toolbox: powerful high-throughput computational analysis of gene-gene interactions in genome-wide association studies

scientific article

BoLA-DR peptide binding pockets are fundamental for foot-and-mouth disease virus vaccine design in cattle

scientific article published on 13 October 2009

Characterisation of genome-wide association epistasis signals for serum uric acid in human population isolates

scientific article

Characterization of the genetic diversity, structure and admixture of British chicken breeds

scientific article published on 07 December 2011

Complex traits analysis of chicken growth using targeted genetical genomics

article

Consequences of selection for improving production traits on the frequency of deleterious alleles for fitness1

article

Controlling false positives in the mapping of epistatic QTL.

scientific article published on 30 September 2009

Correction: Pedigree- and SNP-Associated Genetics and Recent Environment are the Major Contributors to Anthropometric and Cardiometabolic Trait Variation

scientific article published on 14 February 2017

Correlations in refractive errors between siblings in the Singapore Cohort Study of Risk factors for Myopia

scientific article

Corrigendum of 'High throughput analysis of epistasis in genome-wide association studies with BiForce'

scholarly article published in Bioinformatics

DNA microsatellite analysis of Dolly

scientific article published in Nature

Debrisoquine hydroxylation phenotyping: do we expect too much?

scientific article published in The Lancet

Detecting dominant QTL with variance component analysis in simulated pedigrees

scientific article published in August 2008

Detecting epistasis in human complex traits

scientific article published on 09 September 2014

Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology.

scientific article published on 05 January 2009

Detecting signatures of selection in nine distinct lines of broiler chickens

scientific article published on 16 December 2014

Detection of QTL affecting harvest traits in a commercial Atlantic salmon population

scientific article published on 16 April 2009

Detection of multiple quantitative trait loci and their pleiotropic effects in outbred pig populations

scientific article published on 06 October 2009

Detection of quantitative trait loci for androstenone, skatole and boar taint in a cross between Large White and Meishan pigs

scientific article published in February 2005

Detection of quantitative trait loci for body weights and conformation traits in Beijing ducks

scientific article published on 05 September 2007

Development of a genetic tool for product regulation in the diverse British pig breed market

scientific article

Directional dominance on stature and cognition in diverse human populations

scientific article published in July 2015

Discriminating among cattle breeds using genetic markers

scientific article published on 01 June 1999

Effect of a major QTL affecting IPN resistance on production traits in Atlantic salmon

article

Efficiency of genomic prediction for boar taint reduction in Danish Landrace pigs.

scientific article published on 09 October 2015

EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards

scientific article

Epidemiology and Heritability of Major Depressive Disorder, Stratified by Age of Onset, Sex, and Illness Course in Generation Scotland: Scottish Family Health Study (GS:SFHS)

scientific article published on 16 November 2015

Epistasis: too often neglected in complex trait studies?

scientific article

Estimates of heritability and genetic correlation for body length and resistance to fish pasteurellosis in the gilthead sea bream (Sparus aurata L.)

article

Evaluating the contribution of genetics and familial shared environment to common disease using the UK Biobank.

scientific article published on 18 July 2016

Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

scientific article

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response

scientific article

Genetic and Environmental Risk for Chronic Pain and the Contribution of Risk Variants for Major Depressive Disorder: A Family-Based Mixed-Model Analysis

scientific article

Genetic and environmental determinants of stressful life events and their overlap with depression and neuroticism

scientific article published on 01 January 2018

Genetic and physical mapping of the porcine melatonin receptor 1B gene (MTNR1B) to chromosome 9

article

Genetic and physical mapping, expression analysis and partial sequence of porcine PER1

scientific article published on 01 January 2001

Genetic comparison of a Croatian isolate and CEPH European founders

scientific article

Genetic control of lipids in the mouse cross DU6i x DBA/2.

scientific article published on 8 November 2007

Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers

scientific article published on 01 June 2006

Genetic loci inherited from hens lacking maternal behaviour both inhibit and paradoxically promote this behaviour

scientific article

Genetic mapping of quantitative trait loci affecting carcass and meat quality traits in Beijing ducks (Anas platyrhynchos)

scientific article published on 01 April 2007

Genetic mechanisms of critical illness in Covid-19

scientific article published on 11 December 2020

Genetic parameters for blood oxygen saturation, body weight and breast conformation in 4 meat-type chicken lines

scientific article published in December 2006

Genetical genomics in humans and model organisms

scientific article

Genetical genomics in livestock: potentials and pitfalls

Genome-wide QTL mapping for three traits related to teat number in a White Duroc x Erhualian pig resource population

scientific article published on 18 February 2009

Genome-wide Regional Heritability Mapping Identifies a Locus Within the TOX2 Gene Associated With Major Depressive Disorder

scientific article published on 16 December 2016

Genome-wide analysis of epistasis in body mass index using multiple human populations

scientific article

Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.

scientific article published on 16 April 2018

Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.

scientific article published on 30 November 2017

Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens

scientific article

Genome-wide search for loci controlling serum IGF binding protein levels of mice

scientific article published on 01 April 2001

Genome-wide search for markers associated with bovine spongiform encephalopathy.

scientific article

Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis

scientific article

Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals

scientific article published on 16 October 2020

Genomic prediction of complex human traits: relatedness, trait architecture and predictive meta-models

scientific article

Genomic regions influencing intramuscular fat in divergently selected rabbit lines

scientific article published on 07 November 2019

Haplotype Heritability Mapping Method Uncovers Missing Heritability of Complex Traits

scientific article published on 21 March 2018

Heritability of cortisol response to confinement stress in European sea bass dicentrarchus labrax.

scientific article

High throughput analyses of epistasis for swine body dimensions and organ weights

scientific article published in February 2011

High-throughput analysis of epistasis in genome-wide association studies with BiForce

scientific article published on 21 May 2012

Including copy number variation in association studies to predict genotypic values

scientific article

Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions

scientific article published on 25 November 2019

Inference of identity by descent in population isolates and optimal sequencing studies

scientific article published on 30 January 2013

Investigation of the genetic architecture of a bone carcass weight QTL on BTA6.

scientific article published on 27 February 2012

Linkage Analysis of the Genetic Loci for High Myopia on 18p, 12q, and 17q in 51 U.K. Families

article

Linkage mapping of the locus for inherited ovine arthrogryposis (IOA) to sheep Chromosome 5

scientific article published on 22 January 2007

Linking protein to phenotype with Mendelian Randomization detects 38 proteins with causal roles in human diseases and traits

scientific article published on 06 July 2020

Livestock QTLs--bringing home the bacon?

scientific article published on December 1995

Livestock genomics: bridging the gap between mice and men

scientific article published on 22 October 2007

Local exome sequences facilitate imputation of less common variants and increase power of genome wide association studies

scientific article

Localising loci underlying complex trait variation using Regional Genomic Relationship Mapping

scientific article

Major quantitative trait loci affect resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar).

scientific article

Mapping QTL in the porcine MHC region affecting fatness and growth traits in a Meishan/Large White composite population

scientific article published on 01 February 2011

Mapping Quantitative Trait Loci Affecting Female Reproductive Traits on Porcine Chromosome 81

article

Mapping of multiple quantitative trait loci affecting bovine spongiform encephalopathy.

scientific article published on August 2004

Mapping of quantitative trait loci affecting classical scrapie incubation time in a population comprising several generations of scrapie-infected sheep

article

Mapping of quantitative trait loci affecting organ weights and blood variables in a broiler layer cross

scientific article published on 01 August 2005

Modulation of genetic associations with serum urate levels by body-mass-index in humans

scientific article

No detectable association of the ESR PvuII mutation with sow productivity in a Meishan x Large White F2 population

article

On the prediction of simultaneous inbreeding coefficients at multiple loci

scientific article published on 01 April 2004

Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses

scientific article published on 14 September 2008

Optimal use of regression models in genome‐wide association studies

scientific article published on July 21, 2011

Parent of origin genetic effects on methylation in humans are common and influence complex trait variation

scientific article published on 27 March 2019

Pedigree- and SNP-Associated Genetics and Recent Environment are the Major Contributors to Anthropometric and Cardiometabolic Trait Variation

scientific article published on 2 February 2016

Power of QTL detection using association tests with family controls

Prediction of IBD based on population history for fine gene mapping

scientific article published on 26 April 2006

Properties of local interactions and their potential value in complementing genome-wide association studies

scientific article

Publisher Correction: Parent of origin genetic effects on methylation in humans are common and influence complex trait variation

scientific article published on 01 May 2019

QTL Express: mapping quantitative trait loci in simple and complex pedigrees

scientific article published on 01 February 2002

QTL analysis of body weight and conformation score in commercial broiler chickens using variance component and half-sib analyses

scientific article published in June 2006

QTL detection and allelic effects for growth and fat traits in outbred pig populations.

scientific article published on January 2004

QTL for body weight, morphometric traits and stress response in European sea bass Dicentrarchus labrax.

scientific article published on 18 December 2009

QTL for resistance to summer mortality and OsHV-1 load in the Pacific oyster (Crassostrea gigas)

article

QTL modulating ear size and erectness in pigs

scientific article

QTLs for pre- and postweaning body weight and body composition in selected mice

scientific article published in August 2004

Quantitative trait loci for production traits in pigs: a combined analysis of two Meishan x Large White populations

scientific article published on 21 July 2008

Quantitative trait loci for resistance to fish pasteurellosis in gilthead sea bream (Sparus aurata).

scientific article

Recent genomic heritage in Scotland

scientific article

Regional heritability mapping method helps explain missing heritability of blood lipid traits in isolated populations

scientific article published on 23 December 2015

Search for quantitative trait loci affecting growth and carcass traits in a cross population of beef and dairy cattle.

scientific article published on 12 September 2008

Secreted phosphoprotein 1 expression in endometrium and placental tissues of hyperprolific large white and meishan gilts

scientific article published on 16 May 2013

Segregation analysis of blood oxygen saturation in broilers suggests a major gene influence on ascites

article

Segregation of infectious pancreatic necrosis resistance QTL in the early life cycle of Atlantic Salmon (Salmo salar).

scientific article published in October 2010

Selective genotyping for QTL detection using sib pair analysis in outbred populations with hierarchical structures

scientific article published on November 2000

Shared Genetics and Couple-Associated Environment Are Major Contributors to the Risk of Both Clinical and Self-Declared Depression

scientific article

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

scientific article published in March 2018

Signatures of diversifying selection in European pig breeds.

scientific article

Simultaneous mapping of epistatic QTL in DU6i × DBA/2 mice

scientific article published on 01 July 2005

Strategies to utilize marker-quantitative trait loci associations

scientific article

Ten years of the Genomics of Common Diseases: "The end of the beginning".

scientific article published on 9 December 2016

The cholecystokinin type A receptor g.179A>G polymorphism affects feeding rate

scientific article published on 06 February 2008

The genetic dissection of immune response using gene-expression studies and genome mapping

scientific article

The genomic signature of trait-associated variants

scientific article published on February 18, 2013

The heritability and patterns of DNA methylation in normal human colorectum

scientific article published on 02 March 2016

The heritability of human disease: estimation, uses and abuses

scientific article published on February 2013

The impact of using related individuals for haplotype reconstruction in population studies

scientific article

The porcine gonadotropin-releasing hormone receptor gene (GNRHR): genomic organization, polymorphisms, and association with the number of corpora lutea

scientific article published in February 2001

The power of regional heritability analysis for rare and common variant detection: simulations and application to eye biometrical traits

scientific article

The susceptibility of Atlantic salmon fry to freshwater infectious pancreatic necrosis is largely explained by a major QTL.

scientific article published on 25 November 2009

Towards in vitro genetics

scientific article

True and false positive peaks in genomewide scans: The long and the short of it

article by Peter M. Visscher & Chris Haley published 2001 in Genetic Epidemiology

Uncovering networks from genome-wide association studies via circular genomic permutation

scientific article published on September 2012

Use of high-density SNP data to identify patterns of diversity and signatures of selection in broiler chickens

scientific article