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List of works by Noah Fahlgren

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

scientific article published on 19 June 2015

AGO1-miR173 complex initiates phased siRNA formation in plants

scholarly article

Antiviral ARGONAUTEs Against Turnip Crinkle Virus Revealed by Image-Based Trait Analysis

scientific article published on 01 May 2019

Antiviral Functions of ARGONAUTE Proteins During Turnip Crinkle Virus Infection Revealed by Image-based Trait Analysis in Arabidopsis

Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection

scientific article

CG gene body DNA methylation changes and evolution of duplicated genes in cassava

scientific article

Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C Grass

scientific article published on 09 August 2018

Computational and analytical framework for small RNA profiling by high-throughput sequencing

scientific article published on 23 March 2009

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline

scientific article published on October 2009

Evolution and functional diversification of MIRNA genes

scientific article

Expression of Arabidopsis MIRNA genes

scientific article published on 22 July 2005

Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants

scientific article published on 28 September 2012

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

article

Genome-wide profiling and analysis of Arabidopsis siRNAs

scientific article (publication date: March 2007)

Genome-wide profiling of populus small RNAs

scientific article

Heat stress changes mineral nutrient concentrations in <i>Chenopodium quinoa</i> seed

scientific article published on 06 February 2022

Heating quinoa shoots results in yield loss by inhibiting fruit production and delaying maturity

scientific article published on 23 January 2020

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

scientific article (publication date: 14 February 2007)

Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors

scientific article published on 24 March 2015

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

scientific article (publication date: 5 January 2010)

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

scientific article

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

scientific article published on 20 April 2010

Naïve Bayes pixel-level plant segmentation

article

New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis.

scientific article published on 19 March 2014

P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design

scientific article

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans

scientific article published on 19 June 2008

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

scientific article

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs

scientific article (publication date: 2013)

Plant scientists: GM technology is safe

scientific article published on 18 February 2016

PlantCV v2.0: Image analysis software for high-throughput plant phenotyping

PlantCV v2.0: Image analysis software for high-throughput plant phenotyping

Preparation of Multiplexed Small RNA Libraries From Plants

scientific article published in November 2014

Raspberry Pi Powered Imaging for Plant Phenotyping

article

Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis

scientific article

Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages

scientific article (publication date: October 2007)

Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection

scientific article published on 25 March 2015

Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation

scientific article

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

scientific article

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification

scientific article

The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications

scientific article

Toward a data infrastructure for the Plant Cell Atlas

scientific article published on 6 October 2022

Trait components of whole plant water use efficiency are defined by unique, environmentally responsive genetic signatures in the model C4 grass Setaria

article

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

scientific article

Update of ASRP: the Arabidopsis Small RNA Project database

scientific article

miRNA Target Prediction in Plants

article

mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans

scientific article