List of works - Xiaohan Yang

A host plant genome (Zizania latifolia) after a century-long endophyte infection

scientific article published on 13 June 2015

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

scientific article

Abscisic acid receptors: past, present and future.

scientific article published on June 2011

Advances and perspectives on the use of CRISPR/Cas9 systems in plant genomics research.

scientific article published on 17 February 2016

An innovative platform for quick and flexible joining of assorted DNA fragments.

scientific article published on 13 January 2016

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

scientific article

Classification of Complete Proteomes of Different Organisms and Protein Sets Based on Their Protein Distributions in Terms of Some Key Attributes of Proteins.

scientific article

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy

scientific article

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis

scientific article

Comparative analysis of cation/proton antiporter superfamily in plants

scientific article published on 2 April 2013

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom

scientific article published on 8 October 2009

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

scientific article published in 2022

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max

article

Development and use of bioenergy feedstocks for semi-arid and arid lands

scientific article

Development of Agave as a dedicated biomass source: production of biofuels from whole plants

scientific article published on 30 May 2015

Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication

scientific article published on 15 September 2006

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock.

scientific article

Efficient purging of deleterious mutations in plants with haploid selfing

scientific article

Engineering crassulacean acid metabolism to improve water-use efficiency

scientific article

Eukaryotic initiation factor 6, an evolutionarily conserved regulator of ribosome biogenesis and protein translation ⬇️

scientific article published on May 1, 2011

Evolutionary analyses of non-family genes in plants

scientific article published on 22 January 2013

Functional Genomics of Drought Tolerance in Bioenergy Crops

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

scientific article published on 29 January 2009

Genomic aspects of research involving polyploid plants

article

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

scientific article published on 17 February 2011

Informing the improvement and biodesign of crassulacean acid metabolism via system dynamics modelling.

scientific article

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes

scientific article published on 3 September 2012

Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release

scientific article

Manipulation of Root Hair Development and Sorgoleone Production in Sorghum Seedlings

article

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase

scientific article published on 08 July 2019

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

scientific article

Orchestration of carbohydrate processing for crassulacean acid metabolism.

scientific article published on 18 April 2016

PPCM: Combing Multiple Classifiers to Improve Protein-Protein Interaction Prediction

scientific article

Plant Comparative and Functional Genomics

scientific article published on 31 December 2015

Poplar Genomics: State of the Science

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis.

scientific article

Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants

scientific article

Reference genome sequence of the model plant Setaria

scientific article

SOR1, a gene associated with bioherbicide production in sorghum root hairs

article

Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana.

scientific article published on 17 February 2016

Substrate-Assisted Catalysis in the Reaction Catalyzed by Salicylic Acid Binding Protein 2 (SABP2), a Potential Mechanism of Substrate Discrimination for Some Promiscuous Enzymes

scientific article published on 18 August 2015

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

scientific article published on 12 February 2018

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities

scientific article published on 24 February 2014

Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance

scientific article

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

scientific article published on 5 September 2008

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

scientific article

The genome of Eucalyptus grandis

scientific article

The pineapple genome and the evolution of CAM photosynthesis

scientific article published on 2 November 2015

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave ⬇️

scientific article

Transcriptome Sequencing of Agave angustifolia Reveals Conservation and Diversification in the Expression of Cinnamyl Alcohol Dehydrogenase Genes in Agave Species

scientific article published in 2022

Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe

scientific article

Understanding the Catalytic Mechanism of Xanthosine Methyltransferase in Caffeine Biosynthesis from QM/MM Molecular Dynamics and Free Energy Simulations

scientific article published on 2 August 2016

Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.

scientific article published on 17 January 2018

List of works by Xiaohan Yang

A host plant genome (Zizania latifolia) after a century-long endophyte infection

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Abscisic acid receptors: past, present and future.

Advances and perspectives on the use of CRISPR/Cas9 systems in plant genomics research.

An innovative platform for quick and flexible joining of assorted DNA fragments.

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

Classification of Complete Proteomes of Different Organisms and Protein Sets Based on Their Protein Distributions in Terms of Some Key Attributes of Proteins.

Climate-resilient agroforestry: physiological responses to climate change and engineering of crassulacean acid metabolism (CAM) as a mitigation strategy

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis

Comparative analysis of cation/proton antiporter superfamily in plants

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max

Development and use of bioenergy feedstocks for semi-arid and arid lands

Development of Agave as a dedicated biomass source: production of biofuels from whole plants

Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock.

Efficient purging of deleterious mutations in plants with haploid selfing

Engineering crassulacean acid metabolism to improve water-use efficiency

Eukaryotic initiation factor 6, an evolutionarily conserved regulator of ribosome biogenesis and protein translation ⬇️

Evolutionary analyses of non-family genes in plants

Functional Genomics of Drought Tolerance in Bioenergy Crops

Genome sequencing and analysis of the model grass Brachypodium distachyon

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

Genomic aspects of research involving polyploid plants

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

Informing the improvement and biodesign of crassulacean acid metabolism via system dynamics modelling.

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes

Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release

Manipulation of Root Hair Development and Sorgoleone Production in Sorghum Seedlings

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

Orchestration of carbohydrate processing for crassulacean acid metabolism.

PPCM: Combing Multiple Classifiers to Improve Protein-Protein Interaction Prediction

Plant Comparative and Functional Genomics

Poplar Genomics: State of the Science

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis.

Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants

Reference genome sequence of the model plant Setaria

SOR1, a gene associated with bioherbicide production in sorghum root hairs

Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana.

Substrate-Assisted Catalysis in the Reaction Catalyzed by Salicylic Acid Binding Protein 2 (SABP2), a Potential Mechanism of Substrate Discrimination for Some Promiscuous Enzymes

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities

Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

The genome of Eucalyptus grandis

The pineapple genome and the evolution of CAM photosynthesis

Transcript, protein and metabolite temporal dynamics in the CAM plant Agave ⬇️

Transcriptome Sequencing of Agave angustifolia Reveals Conservation and Diversification in the Expression of Cinnamyl Alcohol Dehydrogenase Genes in Agave Species

Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe

Understanding the Catalytic Mechanism of Xanthosine Methyltransferase in Caffeine Biosynthesis from QM/MM Molecular Dynamics and Free Energy Simulations

Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.