List of works - Ivan Baxter

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

scientific article published on 19 June 2015

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

scientific article

A curated list of genes that affect the plant ionome

scientific article published on 21 October 2020

A curated list of genes that control elemental accumulation in plants

A genetic link between leaf carbon isotope composition and whole-plant water use efficiency in the C4 grass Setaria

scientific article published on 22 January 2020

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

scientific article published on 05 October 2020

A plasma membrane H+-ATPase is required for the formation of proanthocyanidins in the seed coat endothelium of Arabidopsis thaliana

scientific article

Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance

scientific article

Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding

BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana

scientific article published on 16 June 2017

Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana

scientific article

Bulk segregant analysis using single nucleotide polymorphism microarrays

scientific article

Canopy position has a profound effect on soybean seed composition

scientific article published on 13 September 2016

Co-ordinated Changes in the Accumulation of Metal Ions in Maize (Zea mays ssp. mays L.) in Response to Inoculation with the Arbuscular Mycorrhizal Fungus Funneliformis mosseae.

scientific article published on 2 August 2017

Community voices: the importance of diverse networks in academic mentoring

Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C Grass

scientific article published on 09 August 2018

Correlation and co-localization of QTL for stomatal density, canopy temperature, and productivity with and without drought stress in Setaria

scientific article published on 01 June 2021

Developmental changes in the metabolic network of snapdragon flowers

scientific article (publication date: 2012)

Elemental Profiles Reflect Plant Adaptations to the Environment ⬇️

scientific article published on June 29, 2012

Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions.

scientific article

Evidence for a role in growth and salt resistance of a plasma membrane H+-ATPase in the root endodermis

scientific article published in August 2001

Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array

scientific article published on 12 October 2004

Forward Genetics by Sequencing EMS Variation-Induced Inbred Lines

scientific article published on 30 December 2016

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana.

scientific article

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

scientific article

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

scholarly article

Genomewide association study of ionomic traits on diverse soybean populations from germplasm collections

scientific article published on 15 January 2018

Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice

scientific article published in June 2003

Grasses suppress shoot-borne roots to conserve water during drought

scientific article published on 15 July 2016

High-fidelity detection of crop biomass quantitative trait loci from low-cost imaging in the field

scientific article published on 22 February 2018

High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome

scientific article

High-throughput profiling and analysis of plant responses over time to abiotic stress

scientific article published on 25 October 2017

Hybridization, polyploidy and clonality influence geographic patterns of diversity and salt tolerance in the model halophyte seashore paspalum (Paspalum vaginatum)

scientific article published on 31 October 2020

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

scientific article published on 18 January 2019

Integrating co-expression networks with GWAS to prioritize causal genes in maize

article

Integration of Experiments across Diverse Environments Identifies the Genetic Determinants of Variation in Sorghum bicolor Seed Element Composition.

scientific article published on 19 February 2016

Introducing Plant Direct

scientific article published on 28 June 2017

Introgression of leginsulin, a cysteine-rich protein, and high-protein trait from an Asian soybean plant introduction genotype into a North American experimental soybean line

scientific article published on 16 March 2015

Ionomics and the study of the plant ionome.

scientific article published on January 2008

Ionomics: The functional genomics of elements

scientific article published on 16 January 2010

Ionomics: studying the social network of mineral nutrients

scientific article

Journal Flexibility in the Troubling Times of COVID-19

scientific article published on 18 March 2020

Journal Flexibility in the Troubling Times of COVID-19

scientific article published on 01 April 2020

Leveraging non-targeted metabolite profiling via statistical genomics

scientific article

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

scientific article

Mapping a plant's chemical vocabulary

article

Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain

scientific article

Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture.

scientific article published in February 2018

Multivariate analysis reveals environmental and genetic determinants of element covariation in the maize grain ionome

scientific article published on 10 May 2019

Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences

scientific article

Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis

scientific article

Noise reduction in genome-wide perturbation screens using linear mixed-effect models.

scientific article published on 17 June 2011

Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters

scientific article published on 18 January 2017

Plant direct author stories

scientific article published on 24 October 2019

Population genetics of Setaria viridis, a new model system

scientific article published on 22 September 2014

Portability at a Keystroke

scientific article published on 01 August 2020

Purdue ionomics information management system. An integrated functional genomics platform

scientific article

Reflections on the first year of Plant Direct

scientific article published on 29 November 2018

Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis

scientific article

Should we treat the ionome as a combination of individual elements, or should we be deriving novel combined traits?

scientific article

Single-kernel ionomic profiles are highly heritable indicators of genetic and environmental influences on elemental accumulation in maize grain (Zea mays).

scientific article

Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana.

scientific article

Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana

scientific article

Synthetic Ways to Tris(nucleobase) Complexes Derived from cis-Diammineplatinum(II) and a Platinum(II) Complex Containing Four Different Ligands, Three of Which Are Nucleobases

scientific article

The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

scientific article published on 21 October 2016

The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis.

scientific article

The scope of plant direct

scientific article published on 17 October 2017

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

scientific article published on 23 June 2017

Trait components of whole plant water use efficiency are defined by unique, environmentally responsive genetic signatures in the model C4 grass Setaria

article

Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1)

scientific article

We aren't good at picking candidate genes, and it's slowing us down

scientific article published on 24 February 2020

List of works by Ivan Baxter

A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

A curated list of genes that affect the plant ionome

A curated list of genes that control elemental accumulation in plants

A genetic link between leaf carbon isotope composition and whole-plant water use efficiency in the C4 grass Setaria

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

A plasma membrane H+-ATPase is required for the formation of proanthocyanidins in the seed coat endothelium of Arabidopsis thaliana

Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance

Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding

BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana

Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana

Bulk segregant analysis using single nucleotide polymorphism microarrays

Canopy position has a profound effect on soybean seed composition

Co-ordinated Changes in the Accumulation of Metal Ions in Maize (Zea mays ssp. mays L.) in Response to Inoculation with the Arbuscular Mycorrhizal Fungus Funneliformis mosseae.

Community voices: the importance of diverse networks in academic mentoring

Components of Water Use Efficiency Have Unique Genetic Signatures in the Model C Grass

Correlation and co-localization of QTL for stomatal density, canopy temperature, and productivity with and without drought stress in Setaria

Developmental changes in the metabolic network of snapdragon flowers

Elemental Profiles Reflect Plant Adaptations to the Environment ⬇️

Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions.

Evidence for a role in growth and salt resistance of a plasma membrane H+-ATPase in the root endodermis

Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array

Forward Genetics by Sequencing EMS Variation-Induced Inbred Lines

Genome sequencing and analysis of the model grass Brachypodium distachyon

Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana.

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

Genomewide association study of ionomic traits on diverse soybean populations from germplasm collections

Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice

Grasses suppress shoot-borne roots to conserve water during drought

High-fidelity detection of crop biomass quantitative trait loci from low-cost imaging in the field

High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome

High-throughput profiling and analysis of plant responses over time to abiotic stress

Hybridization, polyploidy and clonality influence geographic patterns of diversity and salt tolerance in the model halophyte seashore paspalum (Paspalum vaginatum)

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Integrating co-expression networks with GWAS to prioritize causal genes in maize

Integration of Experiments across Diverse Environments Identifies the Genetic Determinants of Variation in Sorghum bicolor Seed Element Composition.

Introducing Plant Direct

Introgression of leginsulin, a cysteine-rich protein, and high-protein trait from an Asian soybean plant introduction genotype into a North American experimental soybean line

Ionomics and the study of the plant ionome.

Ionomics: The functional genomics of elements

Ionomics: studying the social network of mineral nutrients

Journal Flexibility in the Troubling Times of COVID-19

Journal Flexibility in the Troubling Times of COVID-19

Leveraging non-targeted metabolite profiling via statistical genomics

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

Mapping a plant's chemical vocabulary

Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain

Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture.

Multivariate analysis reveals environmental and genetic determinants of element covariation in the maize grain ionome

Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences

Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis

Noise reduction in genome-wide perturbation screens using linear mixed-effect models.

Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root-external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters

Plant direct author stories

Population genetics of Setaria viridis, a new model system

Portability at a Keystroke

Purdue ionomics information management system. An integrated functional genomics platform

Reflections on the first year of Plant Direct

Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis

Should we treat the ionome as a combination of individual elements, or should we be deriving novel combined traits?

Single-kernel ionomic profiles are highly heritable indicators of genetic and environmental influences on elemental accumulation in maize grain (Zea mays).

Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana.

Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana

Synthetic Ways to Tris(nucleobase) Complexes Derived from cis-Diammineplatinum(II) and a Platinum(II) Complex Containing Four Different Ligands, Three of Which Are Nucleobases

The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis.

The scope of plant direct

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

Trait components of whole plant water use efficiency are defined by unique, environmentally responsive genetic signatures in the model C4 grass Setaria

Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1)

We aren't good at picking candidate genes, and it's slowing us down