List of works - Michael D. Wilson

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

scientific article

A feedback loop between the liver-enriched transcription factor network and miR-122 controls hepatocyte differentiation

scientific article published on 12 September 2011

A microRNA-328 binding site in PAX6 is associated with centrotemporal spikes of rolandic epilepsy

scientific article published on 02 June 2016

A predictive modeling approach for cell line-specific long-range regulatory interactions

scientific article published on 3 September 2015

ARS2 is a conserved eukaryotic gene essential for early mammalian development

scientific article

Alternative polyadenylation is a determinant of oncogenic Ras function

scientific article published on 17 December 2021

Analysis of the conservation of synteny between Fugu and human chromosome 12

scientific article

Blood triglyceride levels are associated with DNA methylation at the serine metabolism gene PHGDH.

scientific article published on 11 September 2017

Break Check: Transcription-Driven Topoisomerase II Collisions near Chromatin Loop Anchors Are Hotspots for DNA Damage and Translocations

scientific article published on 01 July 2019

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.

scientific article

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

scientific article

Characterization of the murine hyaluronidase gene region reveals complex organization and cotranscription of Hyal1 with downstream genes, Fus2 and Hyal3

scientific article (publication date: 21 June 2002)

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

scientific journal article

Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5

scientific article

Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes

scientific article

Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals

scientific article published on 25 January 2021

Cooperativity and rapid evolution of cobound transcription factors in closely related mammals

scientific article

Correction of a splicing defect in a mouse model of congenital muscular dystrophy type 1A using a homology-directed-repair-independent mechanism

scientific article

CpG Methylation, a Parent-of-Origin Effect for Maternal-Biased Transmission of Congenital Myotonic Dystrophy

scientific article published on March 2017

Decreased Transcription Factor Binding Levels Nearby Primate Pseudogenes Suggest Regulatory Degeneration

scientific article published on 16 February 2016

Disruption of the single copy gonadotropin-releasing hormone receptor in mice by gene trap: severe reduction of reproductive organs and functions in developing and adult mice

scientific article

Dual Regulatory Functions of SUFU and Targetome of GLI2 in SHH Subgroup Medulloblastoma

scientific article published on 13 December 2018

ERCC1: a comparative genomic perspective

scientific article published in January 2001

Epigenetics of Atherosclerosis: Emerging Mechanisms and Methods

scientific article published on 10 March 2017

Epigenetics: a new player in the regulation of mammalian puberty

scientific article published on 04 April 2014

Evolution of transcriptional control in mammals

scientific article

Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein

scientific article

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

scientific article

G9a controls placental vascular maturation by activating the Notch Pathway

scientific article published on 28 April 2017

Gene expression profiling of puberty-associated genes reveals abundant tissue and sex-specific changes across postnatal development

scientific article published in September 2017

Genome-scale validation of deep-sequencing libraries

scientific article

Heart enhancers with deeply conserved regulatory activity are established early in zebrafish development

scientific article published in Nature Communications

Hey2 regulates the size of the cardiac progenitor pool during vertebrate heart development

article

Human chromosome 7: DNA sequence and biology

scientific article

Identification of TIA1 mRNA targets during human neuronal development

scientific article published on 19 August 2021

Identification of a novel lipase gene mutated in lpd mice with hypertriglyceridemia and associated with dyslipidemia in humans

scientific article (publication date: 15 May 2003)

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

scientific article

Integrative annotation of variants from 1092 humans: application to cancer genomics

scientific article

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

scientific article published on 13 December 2018

Latent regulatory potential of human-specific repetitive elements

scientific article published on 13 December 2012

Layered genetic control of DNA methylation and gene expression: a locus of multiple sclerosis in healthy individuals

scientific article

MACE: model based analysis of ChIP-exo

scientific article

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

scientific article

Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.

scientific article

RNAseq analysis for the diagnosis of muscular dystrophy

scientific article published on 8 December 2015

Rapid turnover of long noncoding RNAs and the evolution of gene expression

scientific article (publication date: 2012)

Recent segmental and gene duplications in the mouse genome

scientific article

Regulation of CCL2 expression in human vascular endothelial cells by a neighboring divergently transcribed long noncoding RNA

scientific article published on 26 July 2019

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

scientific article

Selective neuronal degeneration in MATR3 S85C knock-in mouse model of early-stage ALS

scientific article published on 20 October 2020

Sex-specific effect of CPB2 Ala147Thr but not Thr325Ile variants on the risk of venous thrombosis: A comprehensive meta-analysis

scientific article

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

scientific article published in Nature Communications

Single nucleotide polymorphisms in an intergenic chromosome 2q region associated with tissue factor pathway inhibitor plasma levels and venous thromboembolism.

scientific article

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes

scientific article published on 23 February 2021

Species-specific transcription in mice carrying human chromosome 21

scientific article

Spell Checking Nature: Versatility of CRISPR/Cas9 for Developing Treatments for Inherited Disorders

scientific article

Sufu- and Spop-mediated downregulation of Hedgehog signaling promotes beta cell differentiation through organ-specific niche signals

scientific article published on 11 October 2019

The evolutionary landscape of alternative splicing in vertebrate species

scientific article

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice

scientific article published on 15 July 2020

The transcriptional regulator CCCTC-binding factor limits oxidative stress in endothelial cells

scientific article published on 02 April 2018

Thrombin generation abnormalities in Quebec platelet disorder

scientific article published on 06 August 2020

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

scientific article published on 31 August 2016

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

scientific article (publication date: 20 January 2012)

List of works by Michael D. Wilson

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden

A feedback loop between the liver-enriched transcription factor network and miR-122 controls hepatocyte differentiation

A microRNA-328 binding site in PAX6 is associated with centrotemporal spikes of rolandic epilepsy

A predictive modeling approach for cell line-specific long-range regulatory interactions

ARS2 is a conserved eukaryotic gene essential for early mammalian development

Alternative polyadenylation is a determinant of oncogenic Ras function

Analysis of the conservation of synteny between Fugu and human chromosome 12

Blood triglyceride levels are associated with DNA methylation at the serine metabolism gene PHGDH.

Break Check: Transcription-Driven Topoisomerase II Collisions near Chromatin Loop Anchors Are Hotspots for DNA Damage and Translocations

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

Characterization of the murine hyaluronidase gene region reveals complex organization and cotranscription of Hyal1 with downstream genes, Fus2 and Hyal3

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5

Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes

Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals

Cooperativity and rapid evolution of cobound transcription factors in closely related mammals

Correction of a splicing defect in a mouse model of congenital muscular dystrophy type 1A using a homology-directed-repair-independent mechanism

CpG Methylation, a Parent-of-Origin Effect for Maternal-Biased Transmission of Congenital Myotonic Dystrophy

Decreased Transcription Factor Binding Levels Nearby Primate Pseudogenes Suggest Regulatory Degeneration

Disruption of the single copy gonadotropin-releasing hormone receptor in mice by gene trap: severe reduction of reproductive organs and functions in developing and adult mice

Dual Regulatory Functions of SUFU and Targetome of GLI2 in SHH Subgroup Medulloblastoma

ERCC1: a comparative genomic perspective

Epigenetics of Atherosclerosis: Emerging Mechanisms and Methods

Epigenetics: a new player in the regulation of mammalian puberty

Evolution of transcriptional control in mammals

Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

G9a controls placental vascular maturation by activating the Notch Pathway

Gene expression profiling of puberty-associated genes reveals abundant tissue and sex-specific changes across postnatal development

Genome-scale validation of deep-sequencing libraries

Heart enhancers with deeply conserved regulatory activity are established early in zebrafish development

Hey2 regulates the size of the cardiac progenitor pool during vertebrate heart development

Human chromosome 7: DNA sequence and biology

Identification of TIA1 mRNA targets during human neuronal development

Identification of a novel lipase gene mutated in lpd mice with hypertriglyceridemia and associated with dyslipidemia in humans

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

Integrative annotation of variants from 1092 humans: application to cancer genomics

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains

Latent regulatory potential of human-specific repetitive elements

Layered genetic control of DNA methylation and gene expression: a locus of multiple sclerosis in healthy individuals

MACE: model based analysis of ChIP-exo

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.

RNAseq analysis for the diagnosis of muscular dystrophy

Rapid turnover of long noncoding RNAs and the evolution of gene expression

Recent segmental and gene duplications in the mouse genome

Regulation of CCL2 expression in human vascular endothelial cells by a neighboring divergently transcribed long noncoding RNA

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

Selective neuronal degeneration in MATR3 S85C knock-in mouse model of early-stage ALS

Sex-specific effect of CPB2 Ala147Thr but not Thr325Ile variants on the risk of venous thrombosis: A comprehensive meta-analysis

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

Single nucleotide polymorphisms in an intergenic chromosome 2q region associated with tissue factor pathway inhibitor plasma levels and venous thromboembolism.

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes

Species-specific transcription in mice carrying human chromosome 21

Spell Checking Nature: Versatility of CRISPR/Cas9 for Developing Treatments for Inherited Disorders

Sufu- and Spop-mediated downregulation of Hedgehog signaling promotes beta cell differentiation through organ-specific niche signals

The evolutionary landscape of alternative splicing in vertebrate species

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice

The transcriptional regulator CCCTC-binding factor limits oxidative stress in endothelial cells

Thrombin generation abnormalities in Quebec platelet disorder

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages