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List of works by Wilfried Haerty

A Galaxy-based training resource for single-cell RNA-sequencing quality control and analyses

scientific article published on 01 December 2019

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

article

A quantitative model for characterizing the evolutionary history of mammalian gene expression

article

Accurate expression quantification from nanopore direct RNA sequencing with NanoCount

scientific article published on 01 February 2022

Adaptation and conservation insights from the koala genome

scientific article published on 02 July 2018

Aequatus: An open-source homology browser

Aequatus: An open-source homology browser

Alpha-synuclein induces the unfolded protein response in Parkinson's disease SNCA triplication iPSC-derived neurons

scientific article

Analysis of structural variants in four African cichlids highlights an association with developmental and immune related genes

article

Association between levels of coding sequence divergence and gene misregulation in Drosophila male hybrids

scientific article published on 20 November 2007

Cerox1 and microRNA-488-3p noncoding RNAs jointly regulate mitochondrial complex I catalytic activity

Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution

scientific article

Considerations when investigating lncRNA function in vivo.

scientific article

Correction: The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity

scientific article published on 12 August 2019

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

scientific article published on 19 February 2018

Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolutionary Consequences of Male Driven Sexual Selection and Sex-Biased Fitness Modifications in Drosophila melanogaster and Members of the simulans Clade

scientific article

Female Attraction to Conspecific Chemical Cues in the Palmate Newt Triturus helveticus

article published in 2005

First large‐scale quantification study of DNA preservation in insects from natural history collections using genome‐wide sequencing

scientific article published in 2022

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

scientific article

Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller incompatibilities between species of Drosophila

scientific article published on 6 June 2006

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees

scientific article published on 7 February 2018

Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

scientific article published on 19 September 2017

Genome-wide discovery of human splicing branchpoints

scientific article

Genome-wide evidence for selection acting on single amino acid repeats

scientific article

Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome

scientific article published on 8 March 2012

Identification of functional long non-coding RNAs in C. elegans

Identification of functional long non-coding RNAs inC. elegans

Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease

scientific article published on 9 March 2017

Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick

scientific article

Increased polymorphism near low-complexity sequences across the genomes of Plasmodium falciparum isolates

scientific article

Increased substitution rates surrounding low-complexity regions within primate proteins

scientific article published on March 2014

Is speciation accompanied by rapid evolution? Insights from comparing reproductive and nonreproductive transcriptomes in Drosophila

scientific article (publication date: 2011)

Long-read sequencing reveals the splicing profile of the calcium channel gene CACNA1C in human brain

article

Low-complexity sequences and single amino acid repeats: not just "junk" peptide sequences

scientific article published on October 2010

Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex

scientific article

Microspatial structure of Drosophila melanogaster populations in Brazzaville: evidence of natural selection acting on morphometrical traits

scientific article published in November 2003

Mutations within lncRNAs are effectively selected against in fruitfly but not in human ⬇️

scientific article published on May 27, 2013

No gene in the genome makes sense except in the light of evolution

scientific article published on 24 April 2014

Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila

scientific article published on 21 July 2009

Pre-reproductive isolation as a consequence of allopatric differentiation between populations of Drosophila melanogaster

scientific article published in October 2005

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

scientific article published on January 2015

Rapid evolution of Beta-keratin genes contribute to phenotypic differences that distinguish turtles and birds from other reptiles

scientific article (publication date: 2013)

Rapid evolution of low complexity sequences and single amino acid repeats across eukaryotes

Reproductive isolation in natural populations of Drosophila melanogaster from Brazzaville (Congo)

Reproductive isolation in natural populations of Drosophila melanogaster from Brazzaville (Congo).

scientific article published in November 2002

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq

scientific article

Sexual selection and maintenance of sex: evidence from comparisons of rates of genomic accumulation of mutations and divergence of sex-related genes in sexual and hermaphroditic species of Caenorhabditis

scientific article published on 14 February 2008

Similar selective factors affect both between-gene and between-exon divergence in Drosophila

scientific article published on 15 January 2009

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti

scientific article

The genomic substrate for adaptive radiation in African cichlid fish

scientific article

The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity.

scientific article published on 2 May 2019

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci

scientific article published in March 2015

Whole-exome sequencing of 228 patients with sporadic Parkinson's disease

scientific article published on 24 January 2017

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