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List of works by Julio Rozas

Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers

scientific article

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies

scientific article published on 03 June 2020

BadiRate: estimating family turnover rates by likelihood-based methods.

scientific article published on 10 November 2011

Chance and predictability in evolution: The genomic basis of convergent dietary specializations in an adaptive radiation

scientific article published on 19 August 2019

Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura

scientific article published on 31 January 2005

Comment on “The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway” ⬇️

scientific article published on June 10, 2013

Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates.

scientific article published in April 2018

Comparative Genomics Uncovers Unique Gene Turnover and Evolutionary Rates in a Gene Family Involved in the Detection of Insect Cuticular Pheromones

scientific article

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures ⬇️

scientific article published on December 13, 2010

Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae).

scientific article published on 30 June 2015

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution

scientific article

Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system

scientific article (publication date: 2011)

Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes.

scientific article published on 23 November 2017

Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability

scientific article published on 28 May 2019

DNA sequence polymorphism analysis using DnaSP.

scientific article published in January 2009

DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms

scientific article published on 16 August 2016

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes

scientific article (publication date: 27 November 2008)

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

scientific article

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

scientific article (publication date: June 2009)

DnaSP, DNA polymorphism analyses by the coalescent and other methods

scientific article (publication date: 12 December 2003)

Evolution of Chemosensory Gene Families in Arthropods: Insight from the First Inclusive Comparative Transcriptome Analysis across Spider Appendages

scientific article published on 27 December 2016

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolutionary analysis of mitogenomes from parasitic and free-living flatworms ⬇️

scientific article published on 20 March 2015

Family size evolution in Drosophila chemosensory gene families: a comparative analysis with a critical appraisal of methods

scientific article published on 19 June 2014

Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition

scientific article published on 23 January 2012

Gene duplications in the E. coli genome: common themes among pathotypes

article

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory

scientific article (publication date: 6 February 2017)

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

scientific article

Genome-wide DNA polymorphism analyses using VariScan

scientific article published on 12 September 2006

Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba.

scientific article

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

scientific article published on 26 May 2020

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

scientific article published on 9 February 2016

High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba.

scientific article published on 31 January 2015

Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism

scientific article

Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot.

scientific article

Molecular Population Genetics of the Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis in Drosophila melanogaster ⬇️

scientific article published on June 16, 2011

Molecular characterization of Botrytis ourmia-like virus, a mycovirus close to the plant pathogenic genus Ourmiavirus

scientific article

Molecular evolution of the major chemosensory gene families in insects

scientific article published on 13 May 2009

Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation

scientific article published on 24 March 2010

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

scientific article published on 11 August 2016

Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

scientific article

Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes

scientific article published on 13 January 2009

Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation

scientific article published on 28 July 2003

On the shoulder of giants: Mitogenome recovery from non‐targeted genome projects for phylogenetic inference and molecular evolution studies

scientific article published on 4 October 2020

Palaeoceanographic changes in the late Pliocene promoted rapid diversification in pelagic seabirds

scientific article published in 2021

PopDrowser: the Population Drosophila Browser.

scientific article published on 15 December 2011

Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans

scientific article published on 6 June 2006

RPS4Y gene family evolution in primates

scientific article

Rapid Functional and Sequence Differentiation of a Tandemly Repeated Species-Specific Multigene Family in Drosophila.

scientific article

Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination.

scientific article published on May 2008

Streptococcus gallolyticus subsp. gallolyticus from human and animal origins: genetic diversity, antimicrobial susceptibility, and characterization of a vancomycin-resistant calf isolate carrying a vanA-Tn1546-like element.

scientific article published on 20 January 2015

TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing.

scientific article published on 24 May 2015

The Drosophila melanogaster Genetic Reference Panel

scientific article

The First Genome of the Balearic Shearwater (<i>Puffinus mauretanicus</i>) Provides a Valuable Resource for Conservation Genomics and Sheds Light on Adaptation to a Pelagic lifestyle

scientific article published on 05 May 2022

The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders

scientific article published in 2021

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

scientific article published on 06 August 2019

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

scientific article

The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates

scientific article published on 01 August 2019

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima ⬇️

scientific article

The nature of introns 4-7 largely reflects the lineage specificity of HLA-A alleles

scientific article published on 12 September 2002

The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert 'Sky Islands'.

scientific article

Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes.

scientific article published on January 2013

Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations

scientific article

Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

scientific article

Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans

scientific article published on 4 February 2007

VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data

scientific article

Weak Polygenic Selection Drives the Rapid Adaptation of the Chemosensory System: Lessons from the Upstream Regions of the Major Gene Families

scientific article

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