List of works - Filipe G. Vieira

A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives

scientific article published in 2021

Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

scholarly article by Maiken Hemme Bro-Jørgensen et al published November 2018 in Journal of Archaeological Science

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

scientific article published on 01 June 2020

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

scientific article

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

scientific article

Comparative Genomics of the Major Chemosensory Gene Families in Arthropods

article

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution

scientific article

Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system

scientific article (publication date: 2011)

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scientific article

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scholarly article published in GigaScience

Erratum: The origin and evolution of maize in the Southwestern United States

scholarly article published in Nature Plants

Estimating IBD tracts from low coverage NGS data

scientific article

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse

scientific article published on 22 September 2015

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

scientific article

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

scientific article

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans

scientific article (publication date: February 2016)

Genomic and proteomic identification of Late Holocene remains: Setting baselines for Black Sea odontocetes

article by Vincent Biard et al published October 2017 in Journal of Archaeological Science: Reports

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

scientific article published on 9 February 2016

Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

scientific article

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

scientific article published in 2021

Improving the estimation of genetic distances from Next-Generation Sequencing data

article by Filipe G. Vieira et al published 30 March 2015 in Biological Journal of the Linnean Society

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

article

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

scientific article published on 01 December 2019

Kouprey (<i>Bos sauveli</i>) genomes unveil polytomic origin of wild Asian <i>Bos</i>

scientific article published on 06 October 2021

Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

article

Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

scientific article

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

scientific article published on 01 February 2018

Parallel adaptation of rabbit populations to myxoma virus

scientific article published on 14 February 2019

Population genomics of grey wolves and wolf-like canids in North America

scientific article published on 12 November 2018

Processing of a membrane protein required for cell-to-cell signaling during endospore formation in Bacillus subtilis

scientific article published on 26 September 2008

Quantifying population genetic differentiation from next-generation sequencing data

scientific article

Sex-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

article

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication

scientific article

The evolutionary history of extinct and living lions

scientific article published on 04 May 2020

The origin and evolution of maize in the American Southwest

The origin and evolution of maize in the Southwestern United States

scientific article

Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

scientific article published in 2022

Travel tales of a worldwide weed: genomic signatures reveal colonial trade routes and prior adaptation are key to the success of Plantago major

preprint available online in 2020

Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

scientific article

Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand”

article by Mikkel-Holger S Sinding et al published August 2017 in Journal of Archaeological Science: Reports

Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

scientific article published on 28 October 2020

ngsTools: methods for population genetics analyses from next-generation sequencing data

scientific article

List of works by Filipe G. Vieira

A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives

Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

Comparative Genomics of the Major Chemosensory Gene Families in Arthropods

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution

Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Erratum: The origin and evolution of maize in the Southwestern United States

Estimating IBD tracts from low coverage NGS data

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

Evolution of genes and genomes on the Drosophila phylogeny

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans

Genomic and proteomic identification of Late Holocene remains: Setting baselines for Black Sea odontocetes

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

Improving the estimation of genetic distances from Next-Generation Sequencing data

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Kouprey (<i>Bos sauveli</i>) genomes unveil polytomic origin of wild Asian <i>Bos</i>

Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

Parallel adaptation of rabbit populations to myxoma virus

Population genomics of grey wolves and wolf-like canids in North America

Processing of a membrane protein required for cell-to-cell signaling during endospore formation in Bacillus subtilis

Quantifying population genetic differentiation from next-generation sequencing data

Sex-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication

The evolutionary history of extinct and living lions

The origin and evolution of maize in the American Southwest

The origin and evolution of maize in the Southwestern United States

Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

Travel tales of a worldwide weed: genomic signatures reveal colonial trade routes and prior adaptation are key to the success of Plantago major

Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand”

Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

ngsTools: methods for population genetics analyses from next-generation sequencing data