List of works by Örjan Carlborg

A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens

scientific article

A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana

scientific article published on 23 September 2015

A century after Fisher: time for a new paradigm in quantitative genetics.

scientific article

A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL.

scientific article

A genetic algorithm based method for stringent haplotyping of family data

scientific article

A genome-wide association study using international breeding-evaluation data identifies major loci affecting production traits and stature in the Brown Swiss cattle breed.

scientific article

A global search reveals epistatic interaction between QTL for early growth in the chicken

scientific article

A multi-locus association analysis method integrating phenotype and expression data reveals multiple novel associations to flowering time variation in wild-collected Arabidopsis thaliana

scientific article published on 22 January 2018

A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus

scientific article published on 01 February 1999

A polygenic genetic architecture of flowering time in the worldwide Arabidopsis thaliana population

scientific article published on 01 January 2019

A unified model for functional and statistical epistasis and its application in quantitative trait Loci analysis.

scientific article published on 3 April 2007

Accounting for genetic interactions improves modeling of individual quantitative trait phenotypes in yeast

scientific article

An Improved Method for Estimating Chromosomal Line Origin in QTL Analysis of Crosses Between Outbred Lines

scientific article published on June 2011

An improved method for quantitative trait loci detection and identification of within-line segregation in F2 intercross designs

scientific article published on April 2008

Application of a genomic model for high-dimensional chemometric analysis

Artificial Selection Response due to Polygenic Adaptation from a Multilocus, Multiallelic Genetic Architecture.

scientific article published in October 2017

Beware of risk for increased false positive rates in genome-wide association studies for phenotypic variability.

scientific article published on 21 May 2013

Bidirectional Selection for Body Weight on Standing Genetic Variation in a Chicken Model

scientific article published on 09 April 2019

Capacitating epistasis--detection and role in the genetic architecture of complex traits.

scientific article published in January 2015

Chicken genomics: feather-pecking and victim pigmentation.

scientific article

Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection

scientific article

Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping

scientific article

Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis

scientific article published on 11 December 2015

Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis.

scientific article published on 16 May 2013

Defining the assumptions underlying modeling of epistatic QTL using variance component methods

scientific article published on 15 March 2008

Dissecting the Genetic Regulation of Yeast Growth Plasticity in Response to Environmental Changes

scientific article published on 29 October 2020

Dissection of the genetic architecture of body weight in chicken reveals the impact of epistasis on domestication traits.

scientific article published on 13 July 2008

Dynamic genetic architecture of yeast response to environmental perturbation shed light on origin of cryptic genetic variation

scientific article published on 11 May 2020

Dynamics of adaptive alleles in divergently selected body weight lines of chickens.

scientific article published on 9 December 2013

Efficient algorithms for quantitative trait loci mapping problems

scientific article published on January 2002

Epistasis and the release of genetic variation during long-term selection

scientific article published on 12 March 2006

Epistasis: too often neglected in complex trait studies?

scientific article

Epistatic regulation of behavioural and morphological traits in the zebrafish (Danio rerio).

scientific article published on 3 June 2006

Estimation and interpretation of genetic effects with epistasis using the NOIA model.

scientific article published on January 2012

Evolutionary potential of hidden genetic variation.

scientific article published in January 2008

Fine mapping and replication of QTL in outbred chicken advanced intercross lines

scientific article published on 17 January 2011

Generation of a multi-locus chicken introgression line to study the effects of genetic interactions on metabolic phenotypes in chickens

scientific article published on 2 March 2012

Genetic Regulation of Transcriptional Variation in Natural Arabidopsis thaliana Accessions.

scientific article

Genetic analysis of an F(2) intercross between two chicken lines divergently selected for body-weight

scientific article

Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines

scientific article published on 23 March 2010

Genetic architecture of tameness in a rat model of animal domestication

scientific article

Genetic dissection of growth traits in a Chinese indigenous × commercial broiler chicken cross

scientific article

Genetic influences on brain gene expression in rats selected for tameness and aggression

scientific article

Genetic regulation of transcriptional variation in natural Arabidopsis thaliana accessions

Genetics of Interactive Behavior in Silver Foxes (Vulpes vulpes).

scientific article

Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis

scientific article

Genome-wide effects of long-term divergent selection

scientific article

Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

scientific article

Genomic analysis of variation in hindlimb musculature of mice from the C57BL/6J and DBA/2J lineage

scientific article

Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost-efficient approach

scientific article published on 14 August 2019

Hierarchical likelihood opens a new way of estimating genetic values using genome-wide dense marker maps

scientific article

High in situ rat intestinal permeability of artemisinin unaffected by multiple dosing and with no evidence of P-glycoprotein involvement

article

Higher order interactions: detection of epistasis using machine learning and evolutionary computation.

scientific article published in January 2013

How to deal with genotype uncertainty in variance component quantitative trait loci analyses.

scientific article published on 18 July 2011

How to perform meaningful estimates of genetic effects.

scientific article

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data.

scientific article

Identification of null alleles and deletions from SNP genotypes for an intercross between domestic and wild chickens

scientific article published on 07 August 2013

Imputation-Based Fine-Mapping Suggests That Most QTL in an Outbred Chicken Advanced Intercross Body Weight Line Are Due to Multiple, Linked Loci.

scientific article published on 31 October 2016

Increasing the efficiency of variance component quantitative trait loci analysis by using reduced-rank identity-by-descent matrices

scientific article published on 4 May 2007

Inheritance beyond plain heritability: variance-controlling genes in Arabidopsis thaliana.

scientific article

MAPfastR: quantitative trait loci mapping in outbred line crosses

scientific article published on 9 December 2013

Major growth QTLs in fowl are related to fearful behavior: possible genetic links between fear responses and production traits in a red junglefowl x white leghorn intercross.

scientific article published in January 2004

Mapping QTL affecting a systemic sclerosis-like disorder in a cross between UCD-200 and red jungle fowl chickens

scientific article published on 13 July 2012

Melanocortin-4 receptor (MC4R) genotypes have no major effect on fatness in a Large White x Wild Boar intercross.

scientific article published in April 2002

Methodological aspects of the genetic dissection of gene expression

scientific article published in May 2005

Methodological aspects of the genetic dissection of gene expression

article

Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance

scientific article

Modelling dominance in a flexible intercross analysis

scientific article

Modelling of genetic interactions improves prediction of hybrid patterns – a case study in domestic fowl

scientific article published on 01 October 2012

Multiple Changes of Gene Expression and Function Reveal Genomic and Phenotypic Complexity in SLE-like Disease

scientific article published on 9 June 2015

Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality

scientific article published on 11 December 2014

On the Relationship Between High-Order Linkage Disequilibrium and Epistasis

scientific article published on 31 July 2018

On the relationship between epistasis and genetic variance heterogeneity.

scientific article published on 23 August 2017

PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties

scientific article

Parallel computing in interval mapping of quantitative trait loci.

scientific article published in September 2001

Phenotypic evolution from genetic polymorphisms in a radial network architecture

scientific article

QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits

scientific article published in November 2002

Reassess the t Test: Interact with All Your Data via ANOVA.

scientific article

Replication and explorations of high-order epistasis using a large advanced intercross line pedigree

scientific article

SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools

scientific article

Selection on variance-controlling genes: adaptability or stability.

scientific article published on 24 August 2012

Separation of base allele and sampling term effects gives new insights in variance component QTL analysis

scientific article

Simultaneous mapping of epistatic QTL in DU6i × DBA/2 mice

scientific article published on 01 July 2005

Simultaneous mapping of epistatic QTL in chickens reveals clusters of QTL pairs with similar genetic effects on growth

scientific article published in June 2004

Simultaneous search for multiple QTL using the global optimization algorithm DIRECT.

scientific article published on 25 March 2004

Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment

scientific article

Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment

Statistical epistasis is a generic feature of gene regulatory networks

scientific article published on 8 October 2006

Strong signatures of selection in the domestic pig genome

scientific article

Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection

scientific article

The Multi-allelic Genetic Architecture of a Variance-Heterogeneity Locus for Molybdenum Concentration in Leaves Acts as a Source of Unexplained Additive Genetic Variance

scientific article published on 23 November 2015

The Shepherds' Tale: A Genome-Wide Study across 9 Dog Breeds Implicates Two Loci in the Regulation of Fructosamine Serum Concentration in Belgian Shepherds

scientific article published on 13 May 2015

The genetic dissection of immune response using gene-expression studies and genome mapping

scientific article

The origin of the domestic pig: independent domestication and subsequent introgression

scientific article

The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs.

scientific article

The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci

scientific article

Use of randomization testing to detect multiple epistatic QTLs

scientific article published on 01 April 2002

Variance heterogeneity in Saccharomyces cerevisiae expression data: trans-regulation and epistasis.

scientific article

Whole-genome resequencing reveals loci under selection during chicken domestication

scientific article

cgmisc: enhanced genome-wide association analyses and visualization

scientific article published on 6 August 2015

qtl.outbred: Interfacing outbred line cross data with the R/qtl mapping software. ⬇️

scientific article

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