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List of works by Jean-François Pombert

A lack of parasitic reduction in the obligate parasitic green alga Helicosporidium

scientific article (publication date: May 2014)

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education

scientific article

A new microsporidian parasite, Ordospora pajunii sp. nov (Ordosporidae), of Daphnia longispina highlights the value of genomic data for delineating species boundaries ⬇️

scientific article published on 28 March 2022

A streamlined and predominantly diploid genome in the tiny marine green alga Chloropicon primus

scientific article published on 06 September 2019

Acquisition of an animal gene by microsporidian intracellular parasites

scientific article published on August 2011

Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae

scientific article

Branching network of proteinaceous filaments within the parasitophorous vacuole of Encephalitozoon cuniculi and Encephalitozoon hellem.

scientific article

Comparative Analysis of Codon Usage Bias Patterns in Microsporidian Genomes

scientific article published on 9 June 2015

Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes.

scientific article

Complete Genome Sequence of Staphylococcus lutrae ATCC 700373, a Potential Pathogen Isolated from Deceased Otters

scientific article

Complete Genome Sequence of Vitreoscilla sp. Strain C1, Source of the First Bacterial Hemoglobin

scientific article published on 09 August 2018

Complete Genome Sequences of Two Human Oral Microbiome Commensals, Streptococcus salivarius ATCC 25975 and S. salivarius ATCC 27945.

scientific article published on 15 June 2017

Complete Genome Sequences of Two Interactive Moderate Thermophiles, Paenibacillus napthalenovorans 32O-Y and Paenibacillus sp. 32O-W

scientific article

Complete Genome Sequences of the Potential Zoonotic Pathogens Staphylococcus felis and Staphylococcus kloosii.

scientific article

Complete genome sequences from three genetically distinct strains reveal high intraspecies genetic diversity in the microsporidian Encephalitozoon cuniculi

scientific article published on 4 January 2013

Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions

scientific article

Enhancement of Microbial Biodesulfurization via Genetic Engineering and Adaptive Evolution

scientific article

Erratum: Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae.

scientific article published on 14 December 2015

Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome

scientific article

Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites.

scientific article

Evolutionary relationships among salivarius streptococci as inferred from multilocus phylogenies based on 16S rRNA-encoding, recA, secA, and secY gene sequences

scientific article

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems.

scientific article

Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites

scientific article

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679.

scientific article published on 03 April 2017

Genetic Diversity of Clostridium sporogenes PA 3679 Isolates Obtained from Different Sources as Resolved by Pulsed-Field Gel Electrophoresis and High-Throughput Sequencing

scientific article

Isolation and characterization of an interactive culture of two Paenibacillus species with moderately thermophilic desulfurization ability.

scientific article published on 25 July 2015

Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome

scientific article

Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts

scientific article published in 2012

The 'other' coral symbiont: Ostreobium diversity and distribution

scientific article

The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer

scientific article

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes.

scientific article published on 30 September 2015

The bacteriocin from the prophylactic candidate Streptococcus suis 90-1330 is widely distributed across S. suis isolates and appears encoded in an integrative and conjugative element

scientific article published on 30 April 2019

The complete mitochondrial DNA sequence of the green alga Oltmannsiellopsis viridis: evolutionary trends of the mitochondrial genome in the Ulvophyceae

scientific article published on 24 May 2006

The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae

scientific article published on 10 March 2004

The complete mitochondrial genome from an unidentified Phalansterium species

article by Jean-François Pombert et al published 20 January 2013 in Protist genomics

The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum

scientific article

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

scientific article

The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins ⬇️

scientific article published on June 7, 2012

The mitochondrial genome of the arbuscular mycorrhizal fungus Gigaspora margarita reveals two unsuspected trans-splicing events of group I introns

scientific article published on 9 February 2012

The mitochondrial genome of the entomoparasitic green alga helicosporidium

scientific article

The mitochondrial genome of the prasinophyte Prasinoderma coloniale reveals two trans-spliced group I introns in the large subunit rRNA gene

scientific article

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