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List of works by Filip Van Nieuwerburgh

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Library construction for next-generation sequencing: overviews and challenges

scientific article
Genome-wide association study of obsessive-compulsive disorder.

scientific article
Partitioning the heritability of Tourette syndrome and obsessive compulsive disorder reveals differences in genetic architecture

scientific article published in October 2013
Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation.

scientific article
Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR

scientific article
Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

scientific article
Dissection of the phytohormonal regulation of trichome formation and biosynthesis of the antimalarial compound artemisinin in Artemisia annua plants

scientific article published on 27 September 2010
Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences

scientific article
Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

scientific article
Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing

scientific article
Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination

scientific article
Prevalence of Gender Nonconformity in Flanders, Belgium

scientific article published on 15 January 2015
Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches

scientific article
Association between the dopamine D2 receptor TaqI A2 allele and low activity COMT allele with obsessive-compulsive disorder in males

scientific article published on 19 January 2006
The Quorum Sensing Inhibitor Hamamelitannin Increases Antibiotic Susceptibility of Staphylococcus aureus Biofilms by Affecting Peptidoglycan Biosynthesis and eDNA Release

scientific article published on February 2016
Association between serotonergic candidate genes and specific phenotypes of obsessive compulsive disorder

scientific article published on 27 January 2006
Quantification of integrated HIV DNA by repetitive-sampling Alu-HIV PCR on the basis of poisson statistics

scientific article published on 24 March 2014
Shorter CAG repeats in the androgen receptor gene may enhance hyperandrogenicity in polycystic ovary syndrome

scientific article published in December 2008
Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

scientific article
OSC2 and CYP716A14v2 catalyze the biosynthesis of triterpenoids for the cuticle of aerial organs of Artemisia annua

scientific article published on 9 January 2015
Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method

scientific article
Transcriptome analysis of Bombyx mori larval midgut during persistent and pathogenic cytoplasmic polyhedrosis virus infection

scientific article
Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

scientific article published on 3 August 2015
Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

scientific article
Automatic detection of spermatozoa for laser capture microdissection

scientific article
Perfrin, a novel bacteriocin associated with netB positive Clostridium perfringens strains from broilers with necrotic enteritis

scientific article published on 5 April 2014
Forensic STR analysis using massive parallel sequencing

scientific article published on 13 April 2012
Full genome sequences of all nine Chlamydia psittaci genotype reference strains

scientific article published on December 2012
Quantitation of artemisinin and its biosynthetic precursors in Artemisia annua L. by high performance liquid chromatography-electrospray quadrupole time-of-flight tandem mass spectrometry

scientific article published on 2 May 2006
Fetal microchimeric cells in blood of women with an autoimmune thyroid disease

scientific article
16S rRNA Amplicon Sequencing Demonstrates that Indoor-Reared Bumblebees (Bombus terrestris) Harbor a Core Subset of Bacteria Normally Associated with the Wild Host

scientific article published on 29 April 2015
Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts

scientific article published on August 14, 2015
Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1).

scientific article
Caspase-14-deficient mice are more prone to the development of parakeratosis

scientific article published on 27 September 2012
Variations in the exome of the LNCaP prostate cancer cell line

scientific article
Presence and potential of cell free DNA in different types of forensic samples

scientific article published on 11 January 2013
Modification of citrulline residues with 2,3-butanedione facilitates their detection by liquid chromatography/mass spectrometry

scientific article published on June 2011
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

scientific article published on 20 May 2010
Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

scientific article
Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia

scientific article published on 16 September 2016
My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing

scientific article
Evaluation of three DNA extraction protocols for forensic STR typing after laser capture microdissection

scientific article
Performance of four modern whole genome amplification methods for copy number variant detection in single cells.

scientific article published on 13 June 2017
Presence and analysis of plasmids in human and animal associated arcobacter species

scientific article published on 20 January 2014
TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

scientific article published in Nature Communications
The role of the COMT Val(158)Met polymorphism in the phenotypic expression of obsessive-compulsive disorder.

scientific article
Suspension fluorescence in situ hybridization (S-FISH) combined with automatic detection and laser microdissection for STR profiling of male cells in male/female mixtures

scientific article
Validation of a sensitive DNA walking strategy to characterise unauthorised GMOs using model food matrices mimicking common rice products

scientific article published on 5 October 2014
Genome Sequence of Helicobacter heilmannii Sensu Stricto ASB1 Isolated from the Gastric Mucosa of a Kitten with Severe Gastritis

scientific article published on 15 January 2013
Phospho-iTRAQ: assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry

scientific article published on 02 January 2015

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