List of works by Filip Van Nieuwerburgh

16S rRNA Amplicon Sequencing Demonstrates that Indoor-Reared Bumblebees (Bombus terrestris) Harbor a Core Subset of Bacteria Normally Associated with the Wild Host

scientific article published on 29 April 2015

A doubling of microphytobenthos biomass coincides with a tenfold increase in denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary

scientific article

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

scientific article published on 11 September 2019

Activin A-derived human embryonic stem cells show increased competence to differentiate into primordial germ cell-like cells

scientific article published on 02 February 2021

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

scientific article published on 20 May 2010

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

scientific article

Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches

scientific article

Association between serotonergic candidate genes and specific phenotypes of obsessive compulsive disorder

scientific article published on 27 January 2006

Association between the dopamine D2 receptor TaqI A2 allele and low activity COMT allele with obsessive-compulsive disorder in males

scientific article published on 19 January 2006

Automatic detection of spermatozoa for laser capture microdissection

scientific article

Autovaccination confers protection against Devriesea agamarum associated septicemia but not dermatitis in bearded dragons (Pogona vitticeps)

scientific article

Caspase-14-deficient mice are more prone to the development of parakeratosis

scientific article published on 27 September 2012

Catechol-O-methyltranferase gene expression is associated with response to citalopram in obsessive-compulsive disorder

article

Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics

scientific article published on 3 July 2017

Characterization of the inflammatory microenvironment and hepatic macrophage subsets in experimental hepatocellular carcinoma models

scientific article published on 16 March 2021

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background.

scientific article

Comparative genomics of Flavobacterium columnare unveils novel insights in virulence and antimicrobial resistance mechanisms

Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences

scientific article

Compulsivity in mouse strains homologous with chromosomes 7p and 15q linked to obsessive-compulsive disorder

scientific article published on 01 January 2010

Detailed method description for noninvasive monitoring of differentiation status of human embryonic stem cells

scientific article

Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR

scientific article

Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1).

scientific article

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua ⬇️

scientific article

Differential transcriptome analysis of the common shrimp Crangon crangon: special focus on the nuclear receptors and RNAi-related genes

scientific article published on 24 June 2014

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation.

scientific article

Dissection of the phytohormonal regulation of trichome formation and biosynthesis of the antimalarial compound artemisinin in Artemisia annua plants

scientific article published on 27 September 2010

Distinct and temporary-restricted epigenetic mechanisms regulate human αβ and γδ T cell development

scientific article published on 27 July 2020

Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov.

scientific article

Draft Genome Sequence of Methicillin-Resistant Staphylococcus epidermidis Strain ET-024, Isolated from an Endotracheal Tube Biofilm of a Mechanically Ventilated Patient

scientific article

Effect of β-adrenergic receptor agents on cardiac structure and function and whole-body gene expression in Daphnia magna

article

Elucidation of the mechanism behind the potentiating activity of baicalin against Burkholderia cenocepacia biofilms

scientific article published on 2 January 2018

Endogenous suppression of WNT signalling in human embryonic stem cells leads to low differentiation propensity towards definitive endoderm

scientific article published on 17 March 2021

Enrichment of circulating trophoblasts from maternal blood using laminar microscale vortices

scientific article published on 01 February 2021

Evaluation of three DNA extraction protocols for forensic STR typing after laser capture microdissection

scientific article

Fetal microchimeric cells in blood of women with an autoimmune thyroid disease

scientific article

First draft genome assembly of the desert locust, Schistocerca gregaria

scientific article published on 27 July 2020

Forensic STR analysis using massive parallel sequencing

scientific article published on 13 April 2012

Forensic massively parallel sequencing data analysis tool: Implementation of MyFLq as a standalone web- and Illumina BaseSpace(®)-application

scientific article

Forensic tri-allelic SNP genotyping using nanopore sequencing

scientific article published on 12 November 2018

Full genome sequences of all nine Chlamydia psittaci genotype reference strains

scientific article published on December 2012

Genome Sequence of Helicobacter heilmannii Sensu Stricto ASB1 Isolated from the Gastric Mucosa of a Kitten with Severe Gastritis

scientific article published on 15 January 2013

Genome-wide association study of obsessive-compulsive disorder.

scientific article

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

scientific article

HES1 and HES4 have non-redundant roles downstream of Notch during early human T cell development

scientific article published on 09 January 2020

Hatching is modulated by microRNA-378a-3p derived from extracellular vesicles secreted by blastocysts

scientific article published on 17 March 2022

Honey bee predisposition of resistance to ubiquitous mite infestations

scientific article published on 24 May 2019

Human Thymic CD10+ PD-1+ Intraepithelial Lymphocyte Precursors Acquire Interleukin-15 Responsiveness at the CD1a- CD95+ CD28- CCR7- Developmental Stage

scientific article published on 20 November 2020

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination

scientific article

Illumina sequencing of 15 deafness genes using fragmented amplicons.

scientific article

Impact of allelic dropout on evidential value of forensic DNA profiles using RMNE.

scientific article published on 23 November 2008

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

scientific article published on 3 August 2015

Library construction for next-generation sequencing: overviews and challenges

scientific article

MYCN-induced nucleolar stress drives an early senescence-like transcriptional program in hTERT-immortalized RPE cells

scientific article published on 14 July 2021

Marine biogenics in sea spray aerosols interact with the mTOR signaling pathway

scientific article published in Scientific Reports

Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods.

scientific article

Maternal Recognition of Pregnancy in the Horse: Are MicroRNAs the Secret Messengers?

scientific article published on 09 January 2020

Metabolic activity, urease production, antibiotic resistance and virulence in dual species biofilms of Staphylococcus epidermidis and Staphylococcus aureus

scientific article

Modification of citrulline residues with 2,3-butanedione facilitates their detection by liquid chromatography/mass spectrometry

scientific article published on June 2011

Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

scientific article

Multiplex STR amplification sensitivity in a silicon microchip.

scientific article published on 29 June 2018

My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing

scientific article

OSC2 and CYP716A14v2 catalyze the biosynthesis of triterpenoids for the cuticle of aerial organs of Artemisia annua

scientific article published on 9 January 2015

Pan-cancer pharmacogenetics: targeted sequencing panels or exome sequencing?

scientific article published on 06 October 2020

Partitioning the heritability of Tourette syndrome and obsessive compulsive disorder reveals differences in genetic architecture

scientific article published in October 2013

Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing.

scientific article

Performance of four modern whole genome amplification methods for copy number variant detection in single cells.

scientific article published on 13 June 2017

Perfrin, a novel bacteriocin associated with netB positive Clostridium perfringens strains from broilers with necrotic enteritis

scientific article published on 5 April 2014

Pharmacogenetics in clinical practice: current level of knowledge among Flemish physicians and pharmacists

scientific article published on 26 August 2020

Phospho-iTRAQ: assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry

scientific article published on 02 January 2015

Photothermally Triggered Endosomal Escape and Its Influence on Transfection Efficiency of Gold-Functionalized JetPEI/pDNA Nanoparticles

scientific article published on 14 August 2018

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

scientific article

Presence and analysis of plasmids in human and animal associated arcobacter species

scientific article published on 20 January 2014

Presence and potential of cell free DNA in different types of forensic samples

scientific article published on 11 January 2013

Prevalence of Gender Nonconformity in Flanders, Belgium

scientific article published on 15 January 2015

Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse.

scientific article published on 27 March 2018

Quantification of integrated HIV DNA by repetitive-sampling Alu-HIV PCR on the basis of poisson statistics

scientific article published on 24 March 2014

Quantitation of artemisinin and its biosynthetic precursors in Artemisia annua L. by high performance liquid chromatography-electrospray quadrupole time-of-flight tandem mass spectrometry ⬇️

scientific article published on 2 May 2006

Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing

scientific article

Quantitative proteomics to characterize specific histone H2A proteolysis in chronic lymphocytic leukemia and the myeloid THP-1 cell line

scientific article

Rare Modifier Variants Alter the Severity of Cardiovascular Disease in Pseudoxanthoma Elasticum: Identification of Novel Candidate Modifier Genes and Disease Pathways Through Mixture of Effects Analysis

publication published on 08 June 2021

Response to serotonin reuptake inhibitors in OCD is not influenced by common CYP2D6 polymorphisms.

scientific article published on June 2009

Retrospective study of the impact of miniSTRs on forensic DNA profiling of touch DNA samples.

scientific article published on 17 June 2014

STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods.

scientific article published on 7 December 2017

Safety assessment of the butyrate-producing Butyricicoccus pullicaecorum strain 25-3(T), a potential probiotic for patients with inflammatory bowel disease, based on oral toxicity tests and whole genome sequencing

scientific article

Short Tandem Repeat analysis after Whole Genome Amplification of single B-lymphoblastoid cells.

scientific article published on 19 January 2018

Shorter CAG repeats in the androgen receptor gene may enhance hyperandrogenicity in polycystic ovary syndrome

scientific article published in December 2008

Silicon µPCR Chip for Forensic STR Profiling with Hybeacon Probe Melting Curves

scientific article published on 14 May 2019

Suspension fluorescence in situ hybridization (S-FISH) combined with automatic detection and laser microdissection for STR profiling of male cells in male/female mixtures

scientific article

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

scientific article published in Nature Communications

The BCESM genomic region contains a regulator involved in quorum sensing and persistence in Burkholderia cenocepacia J2315.

scientific article published on January 2014

The Quorum Sensing Inhibitor Hamamelitannin Increases Antibiotic Susceptibility of Staphylococcus aureus Biofilms by Affecting Peptidoglycan Biosynthesis and eDNA Release

scientific article published on February 2016

The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315.

scientific article

The effects of positioning, reason for screening and the referring veterinarian on prevalence estimates of canine hip dysplasia

scientific article

The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

scientific article published on 31 August 2021

The presence of extracellular microRNAs in the media of cultured Drosophila cells

scientific article published in Scientific Reports

The prevalence of nine genetic disorders in a dog population from Belgium, the Netherlands and Germany

scientific article

The role of the COMT Val(158)Met polymorphism in the phenotypic expression of obsessive-compulsive disorder.

scientific article

The transcription factor ETS1 is an important regulator of human NK cell development and terminal differentiation

scientific article published on 29 April 2020

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis.

scientific article published on 15 December 2017

The transcriptome of the marine calanoid copepod Temora longicornis under heat stress and recovery

scientific article published on 01 November 2018

Transcriptome analysis of Bombyx mori larval midgut during persistent and pathogenic cytoplasmic polyhedrosis virus infection

scientific article

Truncating SLC12A6 variants cause different clinical phenotypes in humans and dogs

scientific article published on 03 June 2019

Uncovering low-level mosaicism in human embryonic stem cells using high throughput single cell shallow sequencing

scientific article published on 16 October 2019

Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia

scientific article published on 16 September 2016

Untangling the structural and molecular mechanisms underlying colour and rapid colour change in a lizard, Agama atra

Validation of a sensitive DNA walking strategy to characterise unauthorised GMOs using model food matrices mimicking common rice products

scientific article published on 5 October 2014

Variations in the exome of the LNCaP prostate cancer cell line

scientific article

Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method

scientific article

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