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List of works by Erik M van Mulligen

A Topic-Based Browser for Large Online Resources

A dictionary to identify small molecules and drugs in free text

scientific article published on 16 September 2009

A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC.

scientific article published on 06 May 2015

A novel feature-based approach to extract drug-drug interactions from biomedical text.

scientific article published on 20 August 2014

A prototype integrated medical workstation environment

scientific article published on 01 April 1993

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Alignment of the UMLS semantic network with BioTop: methodology and assessment

scientific article published on June 2009

Ambiguity of human gene symbols in LocusLink and MEDLINE: creating an inventory and a disambiguation test collection.

scientific article published on January 2003

An Online Ontology: WiktionaryZ

Applied information retrieval and multidisciplinary research: new mechanistic hypotheses in complex regional pain syndrome

scientific article published on 4 May 2007

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

scientific article published on 6 October 2011

Automated extraction of potential migraine biomarkers using a semantic graph

scientific article published on June 2017

Automatic filtering and substantiation of drug safety signals

scientific article

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining

scientific article published in 2010

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining

scientific article published on 3 June 2010

BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry

scientific article published in iswc2008 posters and demonstrations

CALBC silver standard corpus

scientific article published on February 2010

Calling on a million minds for community annotation in WikiProteins

scientific article

Chemical entity recognition in patents by combining dictionary-based and statistical approaches

scientific article (publication date: 2016)

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes

scientific article published on 18 January 2005

CodeMapper: semiautomatic coding of case definitions. A contribution from the ADVANCE project.

scientific article

Comparing and combining chunkers of biomedical text

scientific article published on 4 November 2010

Contextual annotation of web pages for interactive browsing

scientific article published in January 2004

Correction: Automatic Filtering and Substantiation of Drug Safety Signals

scientific article (publication date: 4 May 2012)

Correction: Drug-Induced Acute Myocardial Infarction: Identifying ‘Prime Suspects’ from Electronic Healthcare Records-Based Surveillance System

scientific article (publication date: 23 September 2013)

Databases for knowledge discovery. Examples from biomedicine and health care

scientific article published on 29 September 2005

Distribution of information in biomedical abstracts and full-text publications.

scientific article published on 6 May 2004

Drug prioritization using the semantic properties of a knowledge graph

scientific article published on 18 April 2019

Drug-induced acute myocardial infarction: identifying 'prime suspects' from electronic healthcare records-based surveillance system

scientific article (publication date: 2013)

Education and research in INFOBIOMED, the European Network of Excellence in Biomedical Informatics

scientific article published on 11 October 2007

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview

Evaluating Social Media Networks in Medicines Safety Surveillance: Two Case Studies

scientific article

Evaluation of a multinational, multilingual vaccine debate on Twitter

scientific article

Explain your data by Concept Profile Analysis Web Services

article published in 2014

Extraction of chemical-induced diseases using prior knowledge and textual information

scientific article (publication date: 2016)

Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research

scientific article published on 17 June 2013

Gathering and exploring scientific knowledge in pharmacovigilance

scientific article (publication date: 2013)

HERMES: a health care workstation integration architecture.

scientific article published on January 1994

Knowledge-based extraction of adverse drug events from biomedical text

scientific article

Literature-based concept profiles for gene annotation: the issue of weighting

scientific article published on 10 September 2007

Medical informatics and bioinformatics: a bibliometric study.

scientific article

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

scientific article

Mining microarray datasets aided by knowledge stored in literature

scientific article published on January 2003

Novel protein-protein interactions inferred from literature context

scientific article (publication date: 18 November 2009)

QTLTableMiner++: semantic mining of QTL tables in scientific articles.

scientific article published on 25 May 2018

Recognition of chemical entities: combining dictionary-based and grammar-based approaches

scientific article published on 19 January 2015

Research for research: tools for knowledge discovery and visualization.

scientific article

Rewriting and suppressing UMLS terms for improved biomedical term identification

scientific article

SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data

scientific article

SYMBIOmatics: synergies in Medical Informatics and Bioinformatics--exploring current scientific literature for emerging topics

scientific article

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools

scientific article published on 4 December 2012

The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships

scientific article published on 25 April 2012

The FAIR Guiding Principles for scientific data management and stewardship

scientific article (publication date: 15 March 2016)

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

scientific article

The value of data

scientific article

Thesaurus-based disambiguation of gene symbols

scientific article

Training multidisciplinary biomedical informatics students: three years of experience

scientific article published on 20 December 2007

Training text chunkers on a silver standard corpus: can silver replace gold?

scientific article

UMLS-based access to CPR data. Unified Medical Language Systems.

scientific article

Using an ensemble system to improve concept extraction from clinical records

scientific article published on 03 January 2012

Using contextual queries.

scientific article published on January 2003

Using rule-based natural language processing to improve disease normalization in biomedical text

scientific article published on 06 October 2012

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