Search filters

List of works by David Vallenet

A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

scientific article published on 4 March 2008

A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine

scientific article published on 27 February 2009

A novel acyl-CoA beta-transaminase characterized from a metagenome

scientific article

A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins

scientific article published in 2023

A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening

scientific article published in 2024

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

scientific article

An updated metabolic view of the Bacillus subtilis 168 genome

scientific article published on 21 February 2013

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

scientific article published on 22 November 2017

Channel formation by CarO, the carbapenem resistance-associated outer membrane protein of Acinetobacter baumannii

scientific article

Characterization and distribution of the gene cluster encoding RumC, an anti-Clostridium perfringens bacteriocin produced in the gut.

scientific article published on 6 September 2011

Comparative analysis of Acinetobacters: three genomes for three lifestyles

scientific article published on 19 March 2008

Comparative genomics of aeschynomene symbionts: insights into the ecological lifestyle of nod-independent photosynthetic bradyrhizobia.

scientific article published on 21 December 2011

Comparative genomics of multidrug resistance in Acinetobacter baumannii

scientific article

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites ⬇️

scientific article

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

scientific article

Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen

scientific article published on 02 November 2020

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

scientific article

Core and panmetabolism in Escherichia coli

scientific article

Corrigendum: Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

scientific article published in September 2017

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

scientific article

Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist

scientific article published on 29 April 2019

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

scientific article

GROOLS: reactive graph reasoning for genome annotation through biological processes.

scientific article

Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2.

scientific article published on April 2012

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

scientific article published on 26 September 2009

Global comparison of the membrane subproteomes between a multidrug-resistant Acinetobacter baumannii strain and a reference strain

scientific article published in December 2006

Identification of the last unknown genes in the fermentation pathway of lysine

scientific article published on 13 December 2006

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

scientific article

Large-scale transposon mutagenesis of photosynthetic Bradyrhizobium sp. strain ORS278 reveals new genetic loci putatively important for nod-independent symbiosis with Aeschynomene indica.

scientific article published in June 2010

Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia.

scientific article

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

scientific article

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

scientific article published on 18 May 2009

MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

scientific article

MicroScope: a platform for microbial genome annotation and comparative genomics

scientific article

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis

scientific article published on 01 January 2020

NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis

scientific article (publication date: 2009)

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

scientific article published in January 2009

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

scientific article published on 19 March 2020

Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis

scientific article

Profiling the orphan enzymes

scientific article

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

scientific article

Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles

scientific article published in 2011

Reannotation of the genome sequence of Clostridium difficile strain 630.

scientific article

Revealing the hidden functional diversity of an enzyme family

scientific article

The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes

scientific article

The Frankia alni symbiotic transcriptome.

scientific article

The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle

scientific article

Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia

scientific article published on 19 July 2018

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

scientific article

Paulina is supported by:

About Paulina

Help