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List of works by Mikhail Spivakov

A comparison of peak callers used for DNase-Seq data

scientific article

A new phosphate-starvation response in fission yeast requires the endocytic function of myosin I.

scientific article published on 7 September 2015

A transcription factor collective defines cardiac cell fate and reflects lineage history

scientific article

Analysis of variation at transcription factor binding sites in Drosophila and humans

scientific article published in 2012

Author Correction: Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks

scientific article published in Nature Communications

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

scientific article

CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets.

scientific article published on 08 April 2016

Cohesins functionally associate with CTCF on mammalian chromosome arms

scientific article (publication date: 8 February 2008)

Defining cell type with chromatin profiling

scientific article published in November 2016

Detecting chromosomal interactions in Capture Hi-C data with CHiCAGO and companion tools

scientific article published on 09 August 2021

Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels

scientific article published in Nature Communications

Distinct promoters mediate the regulation of Ebf1 gene expression by interleukin-7 and Pax5

scientific article

Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency

scientific article published in December 2015

Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

scientific article published on May 2017

Epigenetic signatures of stem-cell identity.

scientific article published on April 2007

Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation

scientific article

Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish

scientific article published on 20 March 2014

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells.

scientific article published on 23 March 2017

Integrated genome-scale analysis of the transcriptional regulatory landscape in a blood stem/progenitor cell model

scientific article published on 25 January 2016

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

scientific article

Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators.

scientific article published on 16 May 2010

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

scientific article

Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.

scientific article published on 14 August 2017

Platelet function is modified by common sequence variation in megakaryocyte super enhancers

scientific article

Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks.

scientific article

Publisher Correction: Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels

scientific article published in Nature Communications

Silencers in the spotlight

scientific article published on 01 March 2020

Spatial separation of Xist RNA and polycomb proteins revealed by superresolution microscopy

scientific article

Spurious transcription factor binding: non-functional or genetically redundant?

scientific article published on 30 May 2014

T cell receptor signaling controls Foxp3 expression via PI3K, Akt, and mTOR.

scholarly article

The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells

scientific article published on January 2007

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

scientific article published on 31 May 2016

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