List of works - Charles Girardot

4DXpress: a database for cross-species expression pattern comparisons

scientific article published on 04 October 2007

A conserved role for Snail as a potentiator of active transcription

scientific article published on 8 January 2014

A core transcriptional network for early mesoderm development in Drosophila melanogaster

scientific article published on February 2007

A transcription factor collective defines cardiac cell fate and reflects lineage history

scientific article

Analysis of variation at transcription factor binding sites in Drosophila and humans

scientific article published in 2012

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

scientific article

Combinatorial binding predicts spatio-temporal cis-regulatory activity

scientific article

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

scientific article published on July 2014

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

scientific article published on 6 November 2008

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

scientific article

Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes

scientific article

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

scientific article published on 19 October 2016

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets

scientific article published on 29 May 2019

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition

scientific article published on 19 November 2018

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

scientific article published on December 2016

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

scientific article

Model-based method for transcription factor target identification with limited data.

scientific article

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

scientific article published on 25 September 2017

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

scientific article

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

scientific article

The Role of Chromatin Accessibility in cis-Regulatory Evolution

scientific article published on 01 July 2019

The role of chromatin accessibility in cis-regulatory evolution

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

scientific article published on 8 January 2012

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity

scientific article

List of works by Charles Girardot

4DXpress: a database for cross-species expression pattern comparisons

A conserved role for Snail as a potentiator of active transcription

A core transcriptional network for early mesoderm development in Drosophila melanogaster

A transcription factor collective defines cardiac cell fate and reflects lineage history

Analysis of variation at transcription factor binding sites in Drosophila and humans

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila

Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets.

Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets

Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition

Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

Model-based method for transcription factor target identification with limited data.

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

The Role of Chromatin Accessibility in cis-Regulatory Evolution

The role of chromatin accessibility in cis-regulatory evolution

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity