List of works - Rickard Sandberg

423 RNA helicase A is essential for 1p36 gene KIF1Bβ tumor suppression in neuroblastomas

article

A DNA-nanoassembly-based approach to map membrane protein nanoenvironments

scientific article published on 02 November 2020

A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens.

scientific article published on 28 February 2013

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome

scientific article

Adult Human and Mouse Ovaries Lack DDX4-Expressing Functional Oogonial Stem Cells

Adult human and mouse ovaries lack DDX4-expressing functional oogonial stem cells

scientific article published in October 2015

Alternative isoform regulation in human tissue transcriptomes

scientific article (publication date: 27 November 2008)

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

scientific article

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq

scientific article published on 26 September 2016

Antisense PNA effects in Escherichia coli are limited by the outer-membrane LPS layer

scientific article published on October 2000

Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI).

scientific article

Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

scientific article published on 04 November 2019

BAMboozle removes genetic variation from human sequence data for open data sharing

scientific article published on 28 October 2021

BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages

scientific article published on 9 October 2014

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

scientific article published on 06 April 2020

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

scientific article

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

scientific article

Cell type composition and circuit organization of neocortical radial clones

article

Comparative microarray analysis

scientific article published on January 2006

Decoding breast cancer tissue-stroma interactions using species-specific sequencing

scientific article

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

scientific article published on 13 September 2007

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses

scientific article

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

scientific article published on 21 December 2015

Entering the era of single-cell transcriptomics in biology and medicine

scientific article

Erratum: Corrigendum: The heterogeneity of human CD127+ innate lymphoid cells revealed by single-cell RNA sequencing

scholarly article published in Nature Immunology

Establishment of lympho-myeloid restricted progenitors prior to the emergence of definitive hematopoietic stem cells

Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites

article

Full-length RNA-seq from single cells using Smart-seq2.

scientific article

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

scientific article

Gene expression perturbation in vitro--a growing case for three-dimensional (3D) culture systems

scientific article

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

scientific article published on 3 August 2015

Genomic encoding of transcriptional burst kinetics

scientific article published on 02 January 2019

Heterogeneity in mammalian RNA 3' end formation

scientific article

How to analyze gene expression using RNA-sequencing data

scientific article

Identification of spatial expression trends in single-cell gene expression data

article

Improved precision and accuracy for microarrays using updated probe set definitions

scientific article

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome

scholarly article published in Stem Cells Translational Medicine

Initial seeding of the embryonic thymus by immune-restricted lympho-myeloid progenitors

scientific article published on 03 October 2016

LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy

scientific article published on 20 August 2020

LCM-seq reveals unique transcriptional adaption mechanisms of resistant neurons in spinal muscular atrophy

Lack of correct data format and comparability limits future integrative microarray research

scientific article published in November 2006

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling

scientific article

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

scientific article published on 13 September 2019

Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells

scientific article published on 19 September 2013

Molecular spikes: a gold standard for single-cell RNA counting

scientific article published on 25 April 2022

Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

scientific article published on 16 November 2017

Myelodysplastic Syndromes Are Propagated by Rare and Distinct Human Cancer Stem Cells In Vivo

Myelodysplastic syndromes are propagated by rare and distinct human cancer stem cells in vivo

scientific article published on 15 May 2014

NASC-seq monitors RNA synthesis in single cells

scientific article published on 17 July 2019

Neocortical layer 4 in adult mouse differs in major cell types and circuit organization between primary sensory areas

Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKβ.

scientific article published on 26 November 2012

Notch signaling: simplicity in design, versatility in function ⬇️

scientific article published on September 1, 2011

Novel functions and targets of miR-944 in human cervical cancer cells

scientific article

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells.

scientific article published on 14 May 2018

Phenotypic variation of transcriptomic cell types in mouse motor cortex

scientific article published on 12 November 2020

Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo

scientific article published on 22 February 2017

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

scientific article

Putting cells in their place

scientific article published in May 2015

Q&A: using Patch-seq to profile single cells

scientific article

Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content

scientific article

RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma.

scientific article

Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation

scientific article published on 07 October 2015

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.

scientific article published on 22 December 2017

Reply to ‘High prevalence of clonal monoallelic expression’

scientific article published on 01 September 2018

Sequentially acting Sox transcription factors in neural lineage development

scientific article published on 15 November 2011

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

scientific article published on 5 April 2016

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

scientific article published on September 2016

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

scientific article published on 04 May 2020

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

scientific article

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation

scientific article published on 02 August 2016

Single-cell sequencing of the small-RNA transcriptome

scientific article published on 31 October 2016

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia

scientific article

Small-seq for single-cell small-RNA sequencing

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

scientific article

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals

scientific article published on 15 April 2013

Systems biology is taking off.

scientific article

The Logic of Life

scientific article

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing

scientific article

The human cap-binding complex is functionally connected to the nuclear RNA exosome

scientific article

The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles

scientific article

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

scientific article

Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons

scientific article

Transcription factor-induced lineage selection of stem-cell-derived neural progenitor cells

scientific article

Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance

scientific article published on 09 March 2021

X-chromosome upregulation is driven by increased burst frequency

scientific article published on 03 October 2019

scphaser: haplotype inference using single-cell RNA-seq data

scientific article

List of works by Rickard Sandberg

423 RNA helicase A is essential for 1p36 gene KIF1Bβ tumor suppression in neuroblastomas

A DNA-nanoassembly-based approach to map membrane protein nanoenvironments

A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens.

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome

Adult Human and Mouse Ovaries Lack DDX4-Expressing Functional Oogonial Stem Cells

Adult human and mouse ovaries lack DDX4-expressing functional oogonial stem cells

Alternative isoform regulation in human tissue transcriptomes

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq

Antisense PNA effects in Escherichia coli are limited by the outer-membrane LPS layer

Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI).

Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

BAMboozle removes genetic variation from human sequence data for open data sharing

BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

Cell type composition and circuit organization of neocortical radial clones

Comparative microarray analysis

Decoding breast cancer tissue-stroma interactions using species-specific sequencing

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

Entering the era of single-cell transcriptomics in biology and medicine

Erratum: Corrigendum: The heterogeneity of human CD127+ innate lymphoid cells revealed by single-cell RNA sequencing

Establishment of lympho-myeloid restricted progenitors prior to the emergence of definitive hematopoietic stem cells

Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites

Full-length RNA-seq from single cells using Smart-seq2.

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Gene expression perturbation in vitro--a growing case for three-dimensional (3D) culture systems

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

Genomic encoding of transcriptional burst kinetics

Heterogeneity in mammalian RNA 3' end formation

How to analyze gene expression using RNA-sequencing data

Identification of spatial expression trends in single-cell gene expression data

Improved precision and accuracy for microarrays using updated probe set definitions

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome

Initial seeding of the embryonic thymus by immune-restricted lympho-myeloid progenitors

LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy

LCM-seq reveals unique transcriptional adaption mechanisms of resistant neurons in spinal muscular atrophy

Lack of correct data format and comparability limits future integrative microarray research

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas

Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells

Molecular spikes: a gold standard for single-cell RNA counting

Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

Myelodysplastic Syndromes Are Propagated by Rare and Distinct Human Cancer Stem Cells In Vivo

Myelodysplastic Syndromes Are Propagated by Rare and Distinct Human Cancer Stem Cells In Vivo

Myelodysplastic syndromes are propagated by rare and distinct human cancer stem cells in vivo

NASC-seq monitors RNA synthesis in single cells

NASC-seq monitors RNA synthesis in single cells

Neocortical layer 4 in adult mouse differs in major cell types and circuit organization between primary sensory areas

Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKβ.

Notch signaling: simplicity in design, versatility in function ⬇️

Novel functions and targets of miR-944 in human cervical cancer cells

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells.

Phenotypic variation of transcriptomic cell types in mouse motor cortex

Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

Putting cells in their place

Q&A: using Patch-seq to profile single cells

Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content

RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma.

Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.

Reply to ‘High prevalence of clonal monoallelic expression’

Sequentially acting Sox transcription factors in neural lineage development

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation

Single-cell sequencing of the small-RNA transcriptome

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia

Small-seq for single-cell small-RNA sequencing

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals

Systems biology is taking off.

The Logic of Life