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List of works by Alper Kucukural

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

scientific article published on 8 August 2013

An atlas of cell types in the mammalian epididymis and vas deferens

scientific article published on 30 July 2020

An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes

scientific article published on 24 August 2020

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

scientific article

CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling

scientific article published on 16 April 2019

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon

scientific article published on 30 January 2018

Comparison of RNA isolation and associated methods for extracellular RNA detection by high-throughput quantitative polymerase chain reaction

scholarly article by Kahraman Tanriverdi published in May 2016

DEBrowser: interactive differential expression analysis and visualization tool for count data

scientific article published on 05 January 2019

Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

scientific article published on 16 August 2019

DolphinNext: a distributed data processing platform for high throughput genomics

scientific article published on 19 April 2020

Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans

scientific article published on 23 December 2019

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.

scientific article

Generation and Analysis of Expressed Sequence Tags from Olea europaea L.

scientific article

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome

scientific article

HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells

scientific article published on 17 February 2020

HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet β-Cells From Donors With Type 1 Diabetes

scientific article published on 04 March 2019

I-TASSER: a unified platform for automated protein structure and function prediction

scientific article

Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes ⬇️

scientific article

Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets ⬇️

scientific article

Platelet functional and transcriptional changes induced by intralipid infusion

Simultaneous generation of many RNA-seq libraries in a single reaction

scientific article published on 2 March 2015

Staufen1 senses overall transcript secondary structure to regulate translation

scientific article published on 15 December 2013

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus

scientific article

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