List of works by Richard A. Lempicki

077 PBMC gene expression profiles: Impact of sample handling

article

A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS

scientific article

A comparison of microLC/electrospray ionization-MS and GC/MS for the measurement of stable isotope enrichment from a [2H2]-glucose metabolic probe in T-cell genomic DNA.

scientific article published in December 2003

Actinomycin D induces high-level resistance to thymidine analogs in replication of human immunodeficiency virus type 1 by interfering with host cell thymidine kinase expression.

scientific article published in January 2003

Altered expression of SHIP, a Toll-like receptor pathway inhibitor, is associated with the severity of liver fibrosis in chronic hepatitis C virus infection

scientific article

Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis

scientific article published on 25 September 2009

Association of interleukin-15-induced peripheral immune activation with hepatic stellate cell activation in persons coinfected with hepatitis C virus and HIV.

scientific article

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

scientific article (publication date: 2009)

CCL5 mRNA is a marker for early fibrosis in chronic hepatitis C and is regulated by interferon-α therapy and toll-like receptor 3 signalling

scientific article published on 21 November 2011

CCL5: a double-edged sword in host defense against the hepatitis C virus

scientific article published on October 2011

CD4 T cell survival after intermittent interleukin-2 therapy is predictive of an increase in the CD4 T cell count of HIV-infected patients

scientific article published on September 2008

Comparative efficacy, pharmacokinetic, pharmacodynamic activity, and interferon stimulated gene expression of different interferon formulations in HIV/HCV genotype-1 infected patients

scientific article

Comparison of mRNA and protein measures of cytokines following vaccination with human papillomavirus-16 L1 virus-like particles

scientific article

Correction: LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

scientific article

Cutting edge: L-selectin (CD62L) expression distinguishes small resting memory CD4+ T cells that preferentially respond to recall antigen.

scientific article published in January 2003

Cytokine/chemokine patterns connect host and viral characteristics with clinics during chronic hepatitis C.

scientific article published on 11 May 2012

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

scientific article

DAVID gene ID conversion tool

scientific article published on 30 July 2008

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

scientific article

DAVID: Database for Annotation, Visualization, and Integrated Discovery

scientific article (publication date: 2003)

Differential effects of HIV viral load and CD4 count on proliferation of naive and memory CD4 and CD8 T lymphocytes

scientific article

Differential gene and microRNA expression between etoposide resistant and etoposide sensitive MCF7 breast cancer cell lines

scientific article

Distinct and overlapping genomic profiles and antiviral effects of Interferon-λ and -α on HCV-infected and noninfected hepatoma cells.

scientific article

Dysregulation of innate immunity in hepatitis C virus genotype 1 IL28B-unfavorable genotype patients: impaired viral kinetics and therapeutic response

scientific article

Evaluation of gene expression measurements from commercial microarray platforms ⬇️

scientific article published on October 1, 2003

Evidence for innate immune system activation in HIV type 1-infected elite controllers.

scientific article

Evolution of the pygmy phenotype: evidence of positive selection fro genome-wide scans in African, Asian, and Melanesian pygmies

scientific article

Extracting biological meaning from large gene lists with DAVID.

scientific article published in September 2009

Functional genomics of innate host defense molecules in normal human monocytes in response to Aspergillus fumigatus

scientific article

Gene duplications in prokaryotes can be associated with environmental adaptation

scientific article

Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals

scholarly article

Gene expression profiles in a rabbit model of systemic lupus erythematosus autoantibody production

scientific article

Gene expression profiles in hepatitis C virus (HCV) and HIV coinfection: class prediction analyses before treatment predict the outcome of anti-HCV therapy among HIV-coinfected persons

scientific article published on 13 March 2006

HIV envelope induces a cascade of cell signals in non-proliferating target cells that favor virus replication

scientific article

HIV envelope-directed signaling aberrancies and cell death of CD4+ T cells in the absence of TCR co-stimulation

scientific article

HIV infection and antiretroviral therapy have divergent effects on mitochondria in adipose tissue.

scientific article

HIV-1 envelope protein binds to and signals through integrin α4β7, the gut mucosal homing receptor for peripheral T cells

scientific article

HIV-1 gp120 induces NFAT nuclear translocation in resting CD4+ T-cells

article

High interferon-stimulated gene ISG-15 expression affects HCV treatment outcome in patients co-infected with HIV and HCV.

scientific article published on June 2013

Host gene expression changes correlating with anti-HIV-1 effects in human subjects after treatment with peginterferon Alfa-2a

scientific article published on 26 March 2012

Human immunodeficiency virus and hepatitis C infections induce distinct immunologic imprints in peripheral mononuclear cells

scientific article published on July 2009

Human immunodeficiency virus viremia induces plasmacytoid dendritic cell activation in vivo and diminished alpha interferon production in vitro.

scientific article published on 6 February 2008

IL-2-induced CD4+ T-cell expansion in HIV-infected patients is associated with long-term decreases in T-cell proliferation

scientific article

IL-27 inhibits HIV-1 infection in human macrophages by down-regulating host factor SPTBN1 during monocyte to macrophage differentiation

scientific article published on 4 March 2013

IL-27, a novel anti-HIV cytokine, activates multiple interferon-inducible genes in macrophages

scientific article published in January 2008

Identification and characterization of rapidly dividing U937 clones with differential telomerase activity and gene expression profiles: role of c-Myc/Mad1 and Id/Ets proteins

scientific article published in September 2002

Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV

scientific article

Identification of novel markers for liver fibrosis in HIV/hepatitis C virus coinfected individuals using genomics-based approach

scientific article published on July 2008

Identifying biological themes within lists of genes with EASE

scientific article

Immunodeficiency and intrinsic IFN resistance are associated with viral breakthrough to HCV therapy in HIV-coinfected patients

scientific article published in November 2007

Increased peripheral expansion of naive CD4+ T cells in vivo after IL-2 treatment of patients with HIV infection

scientific article

Induction of prolonged survival of CD4+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients

scientific article published on 14 July 2005

Innate Immunity in HIV Infection

article

Innate immune dysfunction in HIV infection: effect of HIV envelope-NK cell interactions

article

Interleukin-2 induced immune effects in human immunodeficiency virus-infected patients receiving intermittent interleukin-2 immunotherapy

scientific article published in May 2001

Interleukin-2 inhibits HIV-1 replication in some human T cell lymphotrophic virus-1-infected cell lines via the induction and incorporation of APOBEC3G into the virion

scientific article published on 02 May 2013

Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.

scientific article published in January 2012

Interleukin-27 is a potent inhibitor of cis HIV-1 replication in monocyte-derived dendritic cells via a type I interferon-independent pathway

scientific article

Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties

scientific article

LIM kinase 1 - dependent cofilin 1 pathway and actin dynamics mediate nuclear retinoid receptor function in T lymphocytes

scientific article

Lifespan of effector memory CD4+ T cells determined by replication-incompetent integrated HIV-1 provirus

scientific article published on May 2014

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region

scientific article

Mutations in conserved domains of U14 RNA impair 18S ribosomal RNA production in Saccharomyces cerevisiae

scientific article published on 01 January 1990

Naïve T-cell dynamics in human immunodeficiency virus type 1 infection: effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion

scientific article

Pre-gastrula expression of zebrafish extraembryonic genes

scientific article

PubMatrix: a tool for multiplex literature mining

scientific article

R5 and X4 HIV envelopes induce distinct gene expression profiles in primary peripheral blood mononuclear cells

scholarly article

Retinoic acid and liver X receptor agonist synergistically inhibit HIV infection in CD4+ T cells by up-regulating ABCA1-mediated cholesterol efflux

scientific article

Retinoic acid-induced downmodulation of telomerase activity in human cancer cells

scientific article

Safety, tolerability, and mechanisms of antiretroviral activity of pegylated interferon Alfa-2a in HIV-1-monoinfected participants: a phase II clinical trial

scientific article

Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis

scientific article published on 7 February 2013

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

scientific article (publication date: 2009)

Telomere length and heavy-chain mutation status in familial chronic lymphocytic leukemia

scientific article published on 01 September 2002

The CD8+ HLA-DR+ T cells expanded in HIV-1 infection are qualitatively identical to those from healthy controls

scientific article published on 06 August 2012

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

scientific article

The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-β1 production and FcRL4 expression

scientific article published on 27 October 2013

Transcriptomic response to differentiation induction.

scientific article

Twice-weekly pegylated interferon-α-2a and ribavirin results in superior viral kinetics in HIV/hepatitis C virus co-infected patients compared to standard therapy

scientific article

Zap70 signaling pathway mediates glucocorticoid receptor-dependent transcriptional activation: role in the regulation of annexin 1 expression in T cells

article

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