List of works - Rosemary Braun

Abstract 740: Investigating the role of epigenetic mechanisms upon aberrant signaling network activation

Acoustic Enhancement of Sleep Slow Oscillations and Concomitant Memory Improvement in Older Adults.

scientific article

Autonomic dysregulation and sleep homeostasis in insomnia

scientific article published on 09 December 2020

Discovery analysis of TCGA data reveals association between germline genotype and survival in ovarian cancer patients

scientific article

Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics

article

Habitual light exposure relative to circadian timing in delayed sleep-wake phase disorder

Handicap principle implies emergence of dimorphic ornaments ⬇️

scientific article published in November 2016

Identifying differential correlation in gene/pathway combinations

scientific article

Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin

scientific article

Integrative analysis reveals disrupted pathways regulated by microRNAs in cancer

scientific article published on 23 December 2017

Light at night in older age is associated with obesity, diabetes, and hypertension

scientific article published in 2022

MicroRNA expression in squamous cell carcinoma and adenocarcinoma of the esophagus: associations with survival

scientific article

Molecular Dynamics Simulations of Micelle Formation around Dimeric Glycophorin A Transmembrane Helices

scientific article

Multi-SNP analysis of GWAS data identifies pathways associated with nonalcoholic fatty liver disease

scientific article (publication date: 2013)

Needles in the haystack: identifying individuals present in pooled genomic data

scientific article

Partition decoupling for multi-gene analysis of gene expression profiling data

scientific article

Pathways of distinction analysis: a new technique for multi-SNP analysis of GWAS data

scientific article

Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes.

scientific article published on 21 February 2018

Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations

article

Reply to Laing et al.: Accurate prediction of circadian time across platforms

scientific article published on 14 March 2019

Scalable molecular dynamics with NAMD

scientific article (publication date: December 2005)

Semi-supervised network inference using simulated gene expression dynamics.

scientific article published on 27 November 2017

Strengthening sleep-autonomic interaction via acoustic enhancement of slow oscillations

scientific article published on 01 May 2019

Systems analysis of high-throughput data

scientific article

Time-lagged Ordered Lasso for network inference

Universal method for robust detection of circadian state from gene expression

article published in the Proceedings of the National Academy of Sciences of the United States of America

regQTLs: Single nucleotide polymorphisms that modulate microRNA regulation of gene expression in tumors

scientific article published on 17 December 2018

List of works by Rosemary Braun

Abstract 740: Investigating the role of epigenetic mechanisms upon aberrant signaling network activation

Acoustic Enhancement of Sleep Slow Oscillations and Concomitant Memory Improvement in Older Adults.

Autonomic dysregulation and sleep homeostasis in insomnia

Discovery analysis of TCGA data reveals association between germline genotype and survival in ovarian cancer patients

Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics

Habitual light exposure relative to circadian timing in delayed sleep-wake phase disorder

Handicap principle implies emergence of dimorphic ornaments ⬇️

Identifying differential correlation in gene/pathway combinations

Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin

Integrative analysis reveals disrupted pathways regulated by microRNAs in cancer

Light at night in older age is associated with obesity, diabetes, and hypertension

MicroRNA expression in squamous cell carcinoma and adenocarcinoma of the esophagus: associations with survival

Molecular Dynamics Simulations of Micelle Formation around Dimeric Glycophorin A Transmembrane Helices

Multi-SNP analysis of GWAS data identifies pathways associated with nonalcoholic fatty liver disease

Needles in the haystack: identifying individuals present in pooled genomic data

Partition decoupling for multi-gene analysis of gene expression profiling data

Pathways of distinction analysis: a new technique for multi-SNP analysis of GWAS data

Pro-inflammatory cytokine and high doses of ionizing radiation have similar effects on the expression of NF-kappaB-dependent genes.

Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations

Reply to Laing et al.: Accurate prediction of circadian time across platforms

Scalable molecular dynamics with NAMD

Semi-supervised network inference using simulated gene expression dynamics.

Strengthening sleep-autonomic interaction via acoustic enhancement of slow oscillations

Systems analysis of high-throughput data

Time-lagged Ordered Lasso for network inference

Universal method for robust detection of circadian state from gene expression

regQTLs: Single nucleotide polymorphisms that modulate microRNA regulation of gene expression in tumors