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List of works by Kim Rutherford

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses

scientific article

A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows

scientific article published on 11 December 2020

A human-curated annotation of the Candida albicans genome

scientific article

A re-annotation of the Saccharomyces cerevisiae genome.

scientific article

Adipose transcriptome analysis provides novel insights into molecular regulation of prolonged fasting in northern elephant seal pups

Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution ⬇️

scientific article published on 17 October 2017

Artemis: sequence visualization and annotation

scientific article (publication date: October 2000)

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

Canto: an online tool for community literature curation

scientific article

Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications

scientific article published on 01 January 2020

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

scientific article

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance

scientific article

DNA from mollusc shell: a valuable and underutilised substrate for genetic analyses

scientific article published on 30 July 2020

De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

scientific article published on 3 April 2018

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Evolutionary history of the podoplanin gene

article

Female mimicry by sneaker males has a transcriptomic signature in both the brain and gonad in a sex changing fish

scientific article published on 8 November 2017

FlyMine: an integrated database for Drosophila and Anopheles genomics

scientific article published on January 2007

Gene Ontology Consortium: going forward

scientific article (publication date: 2015)

Gene Ontology annotations and resources

scientific article

GeneDB: a resource for prokaryotic and eukaryotic organisms

scientific article published on January 2004

Genetic sex assignment in wild populations using GBS data: a statistical threshold approach.

scientific article published on 14 February 2018

Genome sequence of Yersinia pestis, the causative agent of plague

scientific article

Genome sequence of the human malaria parasite Plasmodium falciparum

scientific article

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei

scientific article

Hidden in plain sight: What remains to be discovered in the eukaryotic proteome?

scholarly article published 16 November 2018

Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?

scientific article published on 01 February 2019

Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development

scientific article published on 24 July 2017

Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinisation using 17α-methyltestoterone

scientific article published on 20 December 2017

Improving functional annotation for industrial microbes: a case study with Pichia pastoris

scientific article published on 11 June 2014

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

scientific article

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

scientific article

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.

scientific article published on 25 November 2015

Male-female relatedness at specific SNP-linkage groups influences cryptic female choice in Chinook salmon (Oncorhynchus tshawytscha).

scientific article published in July 2017

Massive gene decay in the leprosy bacillus

scientific article

Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia

scientific article

Molecular structure of sauropsid β-keratins from tuatara (Sphenodon punctatus)

scientific article published on 09 April 2019

PHI-base in 2022: a multi-species phenotype database for Pathogen–Host Interactions

scientific article published on 08 November 2021

PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database

scientific article

PHI-base: the pathogen-host interactions database

scientific article published on 01 January 2020

PomBase 2015: updates to the fission yeast database

scientific article

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information

article

PomBase: The Scientific Resource for Fission Yeast

PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability

scientific article published in 2024

PomBase: a comprehensive online resource for fission yeast

scientific article

Publisher Correction: The tuatara genome reveals ancient features of amniote evolution

scientific article published on 18 August 2020

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

RNAcentral: a hub of information for non-coding RNA sequences

scholarly article published in Nucleic Acids Research

Reduced representation sequencing detects only subtle regional structure in a heavily exploited and rapidly recolonizing marine mammal species

scientific article published on 05 August 2018

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13

scientific article

Stress, novel sex genes and epigenetic reprogramming orchestrate socially-controlled sex change

article

Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change

scientific article published on 10 July 2019

The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism

scientific article

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129

scientific article

The genome sequence of Schizosaccharomyces pombe

scientific article

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

scientific article

The tuatara genome reveals ancient features of amniote evolution

scientific article published on 5 August 2020

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

scientific article published on 8 December 2019

Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis

scientific article published on 16 February 2016

Viewing and annotating sequence data with Artemis

scientific article

WebACT--an online companion for the Artemis Comparison Tool

scientific article published on 02 August 2005

modMine: flexible access to modENCODE data

scientific article

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