List of works - Daniel A. Keedy

Algorithm for backrub motions in protein design

scientific article published on July 2008

Alternate states of proteins revealed by detailed energy landscape mapping

scientific article

An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering

scientific article published on 07 June 2018

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place

scientific article

Conformational and connotational heterogeneity: a surprising relationship between protein structural flexibility and puns.

scientific article

Conformational variation of proteins at room temperature is not dominated by radiation damage.

scientific article published on January 2017

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites

scientific article published on 4 February 2016

Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR

scientific article

Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility

scientific article

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit

scientific article

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

scientific article published on 30 September 2015

MolProbity: More and better reference data for improved all-atom structure validation

scientific article published on 25 October 2017

MolProbity: all-atom structure validation for macromolecular crystallography

scientific article

New routes for PTP1B allosteric inhibition by multitemperature crystallography, fragment screening and covalent tethering

scholarly article published 13 November 2017

OSPREY: protein design with ensembles, flexibility, and provable algorithms

scientific article

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

scientific article

The role of local backrub motions in evolved and designed mutations

scientific article

Ultrasonic characterization of human cancellous bone in vitro using three different apparent backscatter parameters in the frequency range 0.6-15.0 mhz

scientific article published on 01 July 2008

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

scientific article published on 18 November 2020

List of works by Daniel A. Keedy

Algorithm for backrub motions in protein design

Alternate states of proteins revealed by detailed energy landscape mapping

An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place

Conformational and connotational heterogeneity: a surprising relationship between protein structural flexibility and puns.

Conformational variation of proteins at room temperature is not dominated by radiation damage.

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites

Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR

Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

MolProbity: More and better reference data for improved all-atom structure validation

MolProbity: all-atom structure validation for macromolecular crystallography

New routes for PTP1B allosteric inhibition by multitemperature crystallography, fragment screening and covalent tethering

OSPREY: protein design with ensembles, flexibility, and provable algorithms

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

The role of local backrub motions in evolved and designed mutations

Ultrasonic characterization of human cancellous bone in vitro using three different apparent backscatter parameters in the frequency range 0.6-15.0 mhz

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps