List of works - Alexander Kanapin

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

scientific article (publication date: 16 January 2003)

The transcriptional landscape of the mammalian genome

scientific article

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

scientific article (publication date: 5 December 2002)

Reactome knowledgebase of human biological pathways and processes

scientific article (publication date: 2009)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

InterPro, progress and status in 2005

scientific article

New developments in the InterPro database

scientific article published in January 2007

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

Factors influencing success of clinical genome sequencing across a broad spectrum of disorders

scientific article

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis

scientific article published on 25 January 2014

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis

scientific article published on 27 January 2013

Choice of transcripts and software has a large effect on variant annotation

scientific article

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

scientific article

Mouse proteome analysis

scientific article

Recessive mutations in SPTBN2 implicate β-III spectrin in both cognitive and motor development

scientific article (publication date: 2012)

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes

scientific article

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

scientific article published on January 2003

Multivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin

scientific article published on December 2016

Disruption of SF3B1 results in deregulated expression and splicing of key genes and pathways in myelodysplastic syndrome hematopoietic stem and progenitor cells

scientific article published in August 2015

The pss4 gene from Rhizobium leguminosarum by viciae VF39: cloning, sequence and the possible role in polysaccharide production and nodule formation.

scientific article published in December 1994

Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project

scientific article published in February 2018

Applications of InterPro in protein annotation and genome analysis

scientific article published on September 2002

Development and evaluation of an automated annotation pipeline and cDNA annotation system

scientific article

RASSF1A uncouples Wnt from Hippo signalling and promotes YAP mediated differentiation via p73.

scientific article

Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species.

scientific article

Neanderthal and Denisovan retroviruses in modern humans

scientific article (publication date: 18 November 2013)

A point mutation in the ion conduction pore of AMPA receptor GRIA3 causes dramatically perturbed sleep patterns as well as intellectual disability

scientific article published on October 2017

Interplay between RNA interference and heat shock response systems in Drosophila melanogaster.

scientific article published on October 2016

Human accelerated regions and other human-specific sequence variations in the context of evolution and their relevance for brain development

scientific article

Interactive InterPro-based comparisons of proteins in whole genomes

scientific article published in February 2002

Arginine methylation expands the regulatory mechanisms and extends the genomic landscape under E2F control.

scientific article published on 26 June 2019

Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.

scientific article published in June 2001

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity

scientific article

The Rhizobium leguminosarum bv viciae VF39 pssB gene product participates in symbiotic fixation of molecular nitrogen

scientific article published in October 1996

Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation

Antisence oligodeoxyribonucleotides for fragments of the reverse transcriptase gene of the LINE-1 element of rats disturb the formation of long-term memory

scientific article published in March 2002

InterPro as a new tool for whole genome analysis. A comparative analysis of Mycobacterium tuberculosis, Bacillus subtilis and Escherichia coli as a case study

scientific article

InterPro as a new tool for complete genome analysis: An example of comparative analysis

Phylogenetic analysis of ORF1-containing mobile elements: identification of evolutionary related groups

scientific article

Determination and comparative analysis of the nucleotide sequence for minireplicon fragments of the cryptic plasmid p1414 from the soil strain of Bacillus subtilis

scientific article

Conserved regions of potential ORF1 protein products of mobile elements and retroviral proteins, encoded by the gag gene

scientific article

Between Volga and Ural River basins: concerning family ties of the Abashevo and Sintashta population of the Bronze Age in the context of genetic data

scholarly article published in December 2024

List of works by Alexander Kanapin

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

The transcriptional landscape of the mammalian genome

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

Reactome knowledgebase of human biological pathways and processes

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

The InterPro database, 2003 brings increased coverage and new features

InterPro, progress and status in 2005

New developments in the InterPro database

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

InterPro--an integrated documentation resource for protein families, domains and functional sites

Factors influencing success of clinical genome sequencing across a broad spectrum of disorders

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis

InterPro: an integrated documentation resource for protein families, domains and functional sites

Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis

Choice of transcripts and software has a large effect on variant annotation

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

Mouse proteome analysis

Recessive mutations in SPTBN2 implicate β-III spectrin in both cognitive and motor development

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

Multivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin

Disruption of SF3B1 results in deregulated expression and splicing of key genes and pathways in myelodysplastic syndrome hematopoietic stem and progenitor cells

The pss4 gene from Rhizobium leguminosarum by viciae VF39: cloning, sequence and the possible role in polysaccharide production and nodule formation.

Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project

Applications of InterPro in protein annotation and genome analysis

Development and evaluation of an automated annotation pipeline and cDNA annotation system

RASSF1A uncouples Wnt from Hippo signalling and promotes YAP mediated differentiation via p73.

Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species.

Neanderthal and Denisovan retroviruses in modern humans

A point mutation in the ion conduction pore of AMPA receptor GRIA3 causes dramatically perturbed sleep patterns as well as intellectual disability

Interplay between RNA interference and heat shock response systems in Drosophila melanogaster.

Human accelerated regions and other human-specific sequence variations in the context of evolution and their relevance for brain development

Interactive InterPro-based comparisons of proteins in whole genomes

Arginine methylation expands the regulatory mechanisms and extends the genomic landscape under E2F control.

Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity

The Rhizobium leguminosarum bv viciae VF39 pssB gene product participates in symbiotic fixation of molecular nitrogen

Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation

Antisence oligodeoxyribonucleotides for fragments of the reverse transcriptase gene of the LINE-1 element of rats disturb the formation of long-term memory

InterPro as a new tool for whole genome analysis. A comparative analysis of Mycobacterium tuberculosis, Bacillus subtilis and Escherichia coli as a case study

InterPro as a new tool for complete genome analysis: An example of comparative analysis

Phylogenetic analysis of ORF1-containing mobile elements: identification of evolutionary related groups

Determination and comparative analysis of the nucleotide sequence for minireplicon fragments of the cryptic plasmid p1414 from the soil strain of Bacillus subtilis

Conserved regions of potential ORF1 protein products of mobile elements and retroviral proteins, encoded by the gag gene

Between Volga and Ural River basins: concerning family ties of the Abashevo and Sintashta population of the Bronze Age in the context of genetic data

Reactome – a knowledgebase of human biological pathways