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List of works by Gerhard G Thallinger

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data

scientific article published on 01 January 2019

A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris

scientific article published on 22 November 2015

A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites.

scientific article published on 17 October 2012

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods

scientific article published on 28 November 2017

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research.

scientific article published on 4 December 2013

A physicians' wish list for the clinical application of intestinal metagenomics.

scientific article

A sequence comparison and gene expression data integration add-on for the Pathway Tools software

scientific article

ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6

scientific article

Alterations in the colonic microbiota in response to osmotic diarrhea

scientific article

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

scientific article published on 23 December 2014

Autoimmune response following influenza vaccination in patients with autoimmune inflammatory rheumatic disease

scientific article published in February 2012

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

scientific article

Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients

scientific article

Chordoma Low-Template Microarray Analysis

scientific article published on 7 September 2013

Comparative genome analysis of Campylobacter fetus subspecies revealed horizontally acquired genetic elements important for virulence and niche specificity

scientific article published on 9 January 2014

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data.

scientific article

Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season.

scientific article published on 15 April 2018

Complete Genome Sequence of the Sugar Beet Endophyte Pseudomonas poae RE*1-1-14, a Disease-Suppressive Bacterium

scientific article published on 7 March 2013

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes

scientific article

Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time.

scientific article published on 12 April 2016

Could antibodies against serum amyloid A function as physiological regulators in humans?

scientific article published on 11 August 2010

Critical Issues in Mycobiota Analysis

scientific article published on 14 February 2017

Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function.

scientific article published on 6 July 2016

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival

scientific article published in Scientific Reports

Deciphering lipid structures based on platform-independent decision rules.

scientific article

Deletion of Adipose Triglyceride Lipase links triacylglycerol accumulation to a more aggressive phenotype in A549 lung carcinoma cells.

scientific article published on 19 February 2018

Dimension reduction techniques for the integrative analysis of multi-omics data

scientific article

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics ⬇️

scientific article

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.

scientific article

Finished Genome Sequence of Escherichia coli K-12 Strain HMS174 (ATCC 47011).

scientific article published on 20 November 2014

Finished Genome Sequence of the Laboratory Strain Escherichia coli K-12 RV308 (ATCC 31608).

scientific article published on 20 November 2014

Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines

scientific article

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies

scientific article published on 01 August 2018

Gene expression profiling of suppressor mechanisms in tuberculosis

article

Genome sequence of the ruminal bacterium Megasphaera elsdenii

scientific article published on October 2011

GiSAO.db: a database for ageing research

scientific article

High-Throughput Characterization and Comparison of Microbial Communities

article published in 2013

High-quality genome sequence of Pichia pastoris CBS7435

Human germ/stem cell-specific gene TEX19 influences cancer cell proliferation and cancer prognosis.

scientific article published on 26 April 2017

Identification of evolutionarily conserved genetic regulators of cellular aging

scientific article

Inferring expressed genes by whole-genome sequencing of plasma DNA

article

Inferring expressed genes by whole-genome sequencing of plasma DNA.

scientific article published on 29 August 2016

Information management systems for pharmacogenomics

scientific article

Integrative Analysis of -Omics Data: A Method Comparison

scientific article

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data

scientific article

International cohort study of 73 anti-Ku-positive patients: association of p70/p80 anti-Ku antibodies with joint/bone features and differentiation of disease populations by using principal-components analysis

scientific article

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

scientific article

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data.

scientific article

Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress

scientific article

MASPECTRAS 2: An integration and analysis platform for proteomic data.

scientific article

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

scientific article

MMD-NEURODOC: Multimedia Medical Database – Elektronische Medizinische Bibliothek

scientific article published on 01 January 1998

MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics

scientific article published on 08 August 2017

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors.

scientific article published on 27 December 2017

Molecular Profiling of Phagocytic Immune Cells in Anopheles gambiae Reveals Integral Roles for Hemocytes in Mosquito Innate Immunity

scientific article

More than cell dust: microparticles isolated from cerebrospinal fluid of brain injured patients are messengers carrying mRNAs, miRNAs, and proteins

scientific article published on July 2013

MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes

scientific article

Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells

scientific article published in June 2018

NR4A1-mediated apoptosis suppresses lymphomagenesis and is associated with a favorable cancer-specific survival in patients with aggressive B-cell lymphomas.

scientific article published on 19 February 2014

NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes.

scientific article published in March 2017

Novel functional profiling approach combining reverse phase protein microarrays and human 3-Dex vivotissue cultures: Expression of apoptosis-related proteins in human colon cancer

article

Peroxidase gene discovery from the horseradish transcriptome

scientific article

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

scientific article published in Nature Communications

QPCR: Application for real-time PCR data management and analysis

scientific article

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells

scientific article (publication date: 2014)

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus

scientific article

Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

scientific article

TAMEE: data management and analysis for tissue microarrays

scientific article

The CXCR4-CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro

scientific article published on 24 September 2019

The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori

scientific article published on 14 December 2017

The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions

scientific article

The impact of genetic stress by ATGL deficiency on the lipidome of lipid droplets from murine hepatocytes

scientific article published on 05 June 2013

The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites.

scientific article published on 15 May 2018

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

scientific article

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression

scientific article published on 2 March 2014

Translin and Trax differentially regulate telomere-associated transcript homeostasis

scientific article published on 10 May 2016

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS.

scientific article published on 17 November 2014

Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients

scientific article published on 24 August 2018

VASCo: computation and visualization of annotated protein surface contacts.

scientific article

YPL.db2: the Yeast Protein Localization database, version 2.0.

scientific article published in February 2005

YPL.db: the Yeast Protein Localization database ⬇️

scientific article published on January 1, 2002

miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients

scientific article published on 5 August 2015

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