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List of works by Michael Lund Nielsen

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Lysine acetylation targets protein complexes and co-regulates major cellular functions

scientific article (publication date: 14 August 2009)
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

scientific article published on 28 September 2008
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles

scientific article (publication date: October 2011)
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

scientific article published on 14 October 2009
Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing

scientific article
Citrullination regulates pluripotency and histone H1 binding to chromatin

scientific journal article
Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses

scientific article published on 19 September 2013
Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer

scientific article
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

scientific article published in June 2008
Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass

scientific article
Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues

scientific article published on 11 July 2012
Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose).

scientific article
An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

scientific article
De novo peptide sequencing and identification with precision mass spectrometry

scientific article published on January 2007
ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures.

scientific article published on 25 January 2006
Proteomics-grade de novo sequencing approach

scientific article published in 2005
Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification

scientific article
Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation

scientific article published on 23 January 2017
Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides.

scientific article published on 23 October 2006
Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells

scientific article (publication date: 30 August 2016)
The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD

scientific article
The NBS1-Treacle complex controls ribosomal RNA transcription in response to DNA damage

scientific article published on 27 July 2014
Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry

scientific article
Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue.

scientific article published on 30 September 2016
A new cellular stress response that triggers centriolar satellite reorganization and ciliogenesis

scientific article
Advantages of External Accumulation for Electron Capture Dissociation in Fourier Transform Mass Spectrometry

scientific article published on 01 July 2001
CDK-mediated activation of the SCF(FBXO) (28) ubiquitin ligase promotes MYC-driven transcription and tumourigenesis and predicts poor survival in breast cancer

scientific article published on 14 June 2013
Extent of Modifications in Human Proteome Samples and Their Effect on Dynamic Range of Analysis in Shotgun Proteomics

scientific article published on 02 October 2006
HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain

scientific article published on 10 November 2003
The SOCS2 ubiquitin ligase complex regulates growth hormone receptor levels

scientific article
Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest

scientific article (publication date: 21 February 2014)
Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations.

scientific article published in August 2006
Side-Chain Losses in Electron Capture Dissociation To Improve Peptide Identification

scientific article published on 03 February 2007
Advances in characterizing ubiquitylation sites by mass spectrometry.

scientific article published on 05 January 2013
The molecular basis of ATM-dependent dimerization of the Mdc1 DNA damage checkpoint mediator

scientific article
Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database.

scientific article published on 7 October 2008
Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction.

scientific article published in November 2006
Tousled-like kinases phosphorylate Asf1 to promote histone supply during DNA replication.

scientific article published on 06 March 2014
Immunoaffinity enrichments followed by mass spectrometric detection for studying global protein tyrosine phosphorylation.

scientific article
Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p

scientific article
Specificity and Commonality of the Phosphoinositide-Binding Proteome Analyzed by Quantitative Mass Spectrometry

scientific article published on 23 January 2014
Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signalling

scientific article published on 12 June 2017
Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation

scientific article published on 01 August 2018
Using Guanidine-Hydrochloride for Fast and Efficient Protein Digestion and Single-step Affinity-purification Mass Spectrometry

scientific article published on 26 December 2012
On studying protein phosphorylation patterns using bottom-up LC-MS/MS: the case of human alpha-casein

scientific article published on 13 June 2007
SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides

scientific article published on 21 August 2007
Identification of dominant signaling pathways from proteomics expression data.

scientific article
Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding.

scientific article published in January 2007
Can relative cleavage frequencies in peptides provide additional sequence information?

Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes

scientific article (publication date: July 2012)

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