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List of works by Simon Anders

A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples

scientific article published on 27 July 2020

A computational method for detection of ligand-binding proteins from dose range thermal proteome profiles

scientific article published on 13 November 2020

Accounting for technical noise in single-cell RNA-seq experiments.

scientific article published on 22 September 2013

Activation of Tryptophan and Phenylalanine Catabolism in the Remission Phase of Allergic Contact Dermatitis: A Pilot Study

scientific article published on 22 October 2016

Alanine Tails Signal Proteolysis in Bacterial Ribosome-Associated Quality Control

scientific article published on 30 May 2019

An efficient method for genome-wide polyadenylation site mapping and RNA quantification

scientific article published on 7 January 2013

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

scientific article

An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae

scientific article published on 27 December 2013

Analysing high-throughput sequencing data in Python with HTSeq 2.0

scientific article published in 2022

Building an international consortium for tracking coronavirus health status

scientific article published on 02 June 2020

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

2013 scientific article

DEqMS: a method for accurate variance estimation in differential protein expression analysis

scientific article published on 23 March 2020

Detecting differential usage of exons from RNA-seq data

scientific article

Differential expression analysis for sequence count data

scientific article

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

scientific article published on January 2013

Discovery of novel drug sensitivities in T-PLL by high-throughput ex vivo drug testing and mutation profiling.

scientific article published on 14 August 2017

Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels

scientific article published on 15 June 2020

Drift and conservation of differential exon usage across tissues in primate species

scientific article published on 03 September 2013

EpiSmokEr: A robust classifier to determine smoking status from DNA methylation data

Exploring dimension-reduced embeddings with Sleepwalk

scientific article published on 19 May 2020

Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data

scientific article published on 02 May 2019

FourCSeq: analysis of 4C sequencing data

scientific article

Gene set enrichment analysis of the bronchial epithelium implicates contribution of cell cycle and tissue repair processes in equine asthma

scientific article published in Scientific Reports

Genome-wide analysis of mRNA decay patterns during early Drosophila development

scientific article

HTSeq--a Python framework to work with high-throughput sequencing data

scientific article (publication date: 15 January 2015)

High throughput screening of novel AAV capsids identifies variants for transduction of adult NSCs within the subventricular zone

scientific article published on 16 July 2021

Impaired response of the bronchial epithelium to inflammation characterizes severe equine asthma

scientific article published on 8 September 2017

Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP

scientific article published on 11 August 2015

JNJ872 inhibits influenza A virus replication without altering cellular antiviral responses.

scientific article published on 20 July 2016

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

scientific article (publication date: 2014)

Multi-Omics Studies towards Novel Modulators of Influenza A Virus-Host Interaction

scientific article

Neurofilament light and heterogeneity of disease progression in amyotrophic lateral sclerosis: development and validation of a prediction model to improve interventional trials

scientific article published on 26 August 2021

Nonparametric Analysis of Thermal Proteome Profiles Reveals Novel Drug-binding Proteins

scientific article published on 03 October 2019

Orchestrating high-throughput genomic analysis with Bioconductor

scientific article

Publisher Correction: Building an international consortium for tracking coronavirus health status

scientific article published on 26 June 2020

Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain

scientific article published on 28 February 2019

RNA-Seq workflow: gene-level exploratory analysis and differential expression

scientific article published on 14 October 2015

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions

scientific article

SARS-CoV-2 RNA Extraction Using Magnetic Beads for Rapid Large-Scale Testing by RT-qPCR and RT-LAMP

scientific article published on 07 August 2020

Screening for SARS-CoV-2 infections with colorimetric RT-LAMP and LAMP sequencing

scientific article published on 09 May 2020

Sex-biased gene expression across mammalian organ development and evolution

scientific article published on 02 November 2023

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

scientific article

Single-cell polyadenylation site mapping reveals 3' isoform choice variability

scientific article published on 3 June 2015

Spatial aspects of oncogenic signalling determine the response to combination therapy in slice explants from Kras-driven lung tumours

scientific article published on 14 February 2018

Transcriptome and translatome co-evolution in mammals

scientific article published on 11 November 2020

Visualization of genomic data with the Hilbert curve

scientific article

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