Search filters

List of works by Christoph Flamm

50 Shades of Rule Composition

article

A Sequence-to-Function Map for Ribozyme-Catalyzed Metabolisms

article by Alexander Ullrich & Christoph Flamm published 2011 in Lecture Notes in Computer Science

A Software Package for Chemically Inspired Graph Transformation

scholarly article by Jakob L. Andersen et al published 2016 in Lecture Notes in Computer Science

A generalized model of the repressilator

scientific article published on 2 September 2006

A graph-based toy model of chemistry

scientific article published in July 2003

A minimal and self-consistent in silico cell model based on macromolecular interactions

scientific article published on October 2007

A topological approach to chemical organizations

scientific article published on January 2009

Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation

scientific article published on 14 February 2006

An intermediate level of abstraction for computational systems chemistry

scientific article

Atom Mapping with Constraint Programming

Atom mapping with constraint programming

scientific article published on 29 November 2014

Automatic Inference of Graph Transformation Rules Using the Cyclic Nature of Chemical Reactions

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

scientific article

BarMap: RNA folding on dynamic energy landscapes

scientific article

Beyond energy minimization: approaches to the kinetic folding of RNA

CelloS: A Multi-level Approach to Evolutionary Dynamics

article

Chemical Graph Transformation with Stereo-Information

Chemical Transformation Motifs-Modelling Pathways as Integer Hyperflows

scientific article published on 11 December 2017

Computational Design of a Circular RNA with Prionlike Behavior.

scientific article published on 2 March 2016

Computational design of RNAs with complex energy landscapes

scientific article

Counterexamples in chemical ring perception

scientific article published in March 2004

Design of multistable RNA molecules

scientific article

Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes

scientific article published on 30 September 2004

Efficient computation of RNA folding dynamics

article

Efficient computation of co-transcriptional RNA-ligand interaction dynamics

Efficient computation of co-transcriptional RNA-ligand interaction dynamics

scholarly article by Michael T. Wolfinger published in July 2018

Evolution of metabolic networks: a computational frame-work

article

Evolutionary patterns of non-coding RNAs

scientific article published on 01 April 2005

Explicit Collision Simulation of Chemical Reactions in a Graph Based Artificial Chemistry

Exploring Chemistry Using SMT

Exploring Plant Sesquiterpene Diversity by Generating Chemical Networks

scientific article published in 2019

Finding the K best synthesis plans

scientific article published on 5 April 2018

Folding kinetics of large RNAs

scientific article published on 6 March 2008

Functional Evolution of Ribozyme-Catalyzed Metabolisms in a Graph-Based Toy-Universe

article

Funnels in energy landscapes

article published in 2008

Generic Context-Aware Group Contributions

scientific article published on 01 June 2020

Generic Properties of Chemical Networks: Artificial Chemistry Based on Graph Rewriting

Generic strategies for chemical space exploration

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

In Silico Evolution of Early Metabolism

article

In silico design of ligand triggered RNA switches

scientific article published on 13 April 2018

In silico design of ligand triggered RNA switches

In silicoSupport for Eschenmoser’s Glyoxylate Scenario

Inferring chemical reaction patterns using rule composition in graph grammars

article

Inverse problems in systems biology

Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete

article

Memory-efficient RNA energy landscape exploration ⬇️

scientific article

Modelling Translation Initiation under the Influence of sRNA ⬇️

scientific article published on November 30, 2012

Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data

article by Jakob L. Andersen et al published 25 September 2013 in Entropy

Noisy: identification of problematic columns in multiple sequence alignments

scientific article published on 24 June 2008

On the Complexity of Reconstructing Chemical Reaction Networks

Partition function and base pairing probabilities of RNA heterodimers

scientific article

Physiological environment induces quick response - slow exhaustion reactions.

scientific article published on 21 September 2011

Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks

scientific article

RNA folding at elementary step resolution

scientific article

RNAblueprint: Flexible multiple target nucleic acid sequence design

scientific article published on 25 April 2017

Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM.

scientific article

Structural parameters affecting the kinetics of RNA hairpin formation

scientific article published on 19 July 2006

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

scientific article published in May 2004

The Graph Grammar Library - A Generic Framework for Chemical Graph Rewrite Systems

article

The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks

scientific article

The expansion of the metazoan microRNA repertoire

scientific article

Thermodynamic and kinetic folding of riboswitches

scientific article

ViennaRNA Package 2.0

scientific article

Visualization of Lattice-Based Protein Folding Simulations

scholarly article

Visualization of barrier tree sequences

scientific article published in September 2006

Paulina is supported by:

About Paulina

Help