List of works - Tyler Alioto

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

scientific article published on 30 October 2017

A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource

scientific article published on 09 July 2019

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

scientific article

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection

scientific article published on 7 November 2013

An Improved Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Data Analysis Pipeline for the Identification of Carbapenemase-Producing Klebsiella pneumoniae

scientific article published on 18 June 2021

De Novo Assembly and Annotation of the Larval Transcriptome of Two Spadefoot Toads Widely Divergent in Developmental Rate

scientific article published on 08 August 2019

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture

article

European sea bass brain DLB-1 cell line is susceptible to nodavirus: A transcriptomic study

scientific article published on 11 November 2018

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

scientific article

Gene Prediction ⬇️

scientific article published on January 1, 2012

Genome Sequence of Plesiomonas shigelloides Strain 302-73 (Serotype O1).

scientific article published on 27 June 2013

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

scientific article

Genome sequence of the olive tree, Olea europaea

scientific article

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

scientific article published on 26 May 2020

Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae

scientific article published in 2021

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identifying protein-coding genes in genomic sequences

scientific article published on 30 January 2009

Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study

scientific article

Occurrence of the Gene in the -Harboring Plasmids: Adverse Clinical Impact for Direct Tracking of KPC-Producing by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

scientific article published on 19 July 2021

Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha

scientific article published on 01 March 2020

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

scientific article

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

scientific article published in Nature Communications

The Genome Sequence of the Eastern Woodchuck (Marmota monax) - A Preclinical Animal Model for Chronic Hepatitis B

scientific article published on 03 December 2019

The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability

article

The genome of melon (Cucumis melo L.).

scientific article

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

The origins, evolution, and functional potential of alternative splicing in vertebrates

scientific article

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

scientific article published on 22 October 2019

Using geneid to Identify Genes

article

Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

scientific article published on 06 March 2016

List of works by Tyler Alioto

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection

An Improved Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Data Analysis Pipeline for the Identification of Carbapenemase-Producing Klebsiella pneumoniae

De Novo Assembly and Annotation of the Larval Transcriptome of Two Spadefoot Toads Widely Divergent in Developmental Rate

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture

European sea bass brain DLB-1 cell line is susceptible to nodavirus: A transcriptomic study

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

Gene Prediction ⬇️

Genome Sequence of Plesiomonas shigelloides Strain 302-73 (Serotype O1).

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

Genome sequence of the olive tree, Olea europaea

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Identifying protein-coding genes in genomic sequences

Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study

Occurrence of the Gene in the -Harboring Plasmids: Adverse Clinical Impact for Direct Tracking of KPC-Producing by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

The Genome Sequence of the Eastern Woodchuck (Marmota monax) - A Preclinical Animal Model for Chronic Hepatitis B

The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability

The genome of melon (Cucumis melo L.).

The genome sequence of taurine cattle: a window to ruminant biology and evolution

The origins, evolution, and functional potential of alternative splicing in vertebrates

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

Using geneid to Identify Genes

Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

European sea bass brain DLB-1 cell line is susceptible to nodavirus: A transcriptomic study