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List of works by Ari Löytynoja

A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome

scientific article published on 01 November 2019

A hidden Markov model for progressive multiple alignment

article

A model of evolution and structure for multiple sequence alignment

scientific article published on December 2008

A recurrent copy number variation of the NEB triplicate region: only revealed by the targeted nemaline myopathy CGH array

scientific article published on 22 July 2015

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm ⬇️

scientific article published on April 23, 2012

Alignment Methods: Strategies, Challenges, Benchmarking, and Comparative Overview ⬇️

scientific article published on January 1, 2012

An algorithm for progressive multiple alignment of sequences with insertions

scientific article

An inducible genome editing system for plants

scientific article published on 29 June 2020

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

scientific article published in June 2007

Analysis of CACTA transposases reveals intron loss as major factor influencing their exon/intron structure in monocotyledonous and eudicotyledonous hosts

scientific article

Bracketing phenogenotypic limits of mammalian hybridization

scientific article published on 28 November 2018

Cleavage of the Drosophila screw prodomain is critical for a dynamic BMP morphogen gradient in embryogenesis.

scientific article published on 19 February 2014

Determination and validation of principal gene products.

scientific article

Effects of marker type and filtering criteria on Q ST-F ST comparisons

scientific article published on 06 November 2019

Genetic population structure constrains local adaptation in sticklebacks

scientific article published in 2021

Genome content of uncultivated marine Roseobacters in the surface ocean

scientific article published on 19 August 2011

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

MATLIGN: a motif clustering, comparison and matching tool.

scientific article

Matrilinear phylogeography of Atlantic salmon (Salmo salar L.) in Europe and postglacial colonization of the Baltic Sea area.

scientific article published in January 2001

Mechanistic insights into the evolution of DUF26-containing proteins in land plants

article

Metabarcoding Gastrointestinal Nematodes in Sympatric Endemic and Nonendemic Species in Ranomafana National Park, Madagascar

scientific article

Phylogeny-aware alignment with PRANK.

scientific article published in January 2014

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

scientific article

Sex chromosome turnover in hybridizing stickleback lineages

scientific article published on 11 May 2024

Short template switch events explain mutation clusters in the human genome

scientific article

Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks.

scientific article published on 6 January 2015

Séance: reference-based phylogenetic analysis for 18S rRNA studies

scientific article

Tracking year-to-year changes in intestinal nematode communities of rufous mouse lemurs (Microcebus rufus).

scientific article published on 20 April 2015

Uniting Alignments and Trees

scientific article

Wasabi: An Integrated Platform for Evolutionary Sequence Analysis and Data Visualization.

scientific article

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser ⬇️

scientific article published on November 26, 2010

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