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List of works by Ilan Davis

3-D Density Kernel Estimation for Counting in Microscopy Image Volumes Using 3-D Image Filters and Random Decision Trees

A 2D+t Feature-preserving Non-local Means Filter for Image Denoising and Improved Detection of Small and Weak Particles

A Dynein-dependent shortcut rapidly delivers axis determination transcripts into the Drosophila oocyte

scientific article

A Genome-Wide Screen for Dendritically Localized RNAs Identifies Genes Required for Dendrite Morphogenesis

scientific article published on 03 June 2016

A PAR-1-dependent orientation gradient of dynamic microtubules directs posterior cargo transport in the Drosophila oocyte

scientific article

A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons.

scientific article published on February 2009

A cell biologist's guide to high resolution imaging

scientific article published in January 2012

A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder

scientific article

A helicase that gets Oskar's message across

scientific article

A nuclear GFP that marks nuclei in living Drosophila embryos; maternal supply overcomes a delay in the appearance of zygotic fluorescence

scientific article

A single and rapid calcium wave at egg activation in Drosophila

scientific article

Absolute quantitation of individual SARS-CoV-2 RNA molecules provides a new paradigm for infection dynamics and variant differences

scientific article published on 20 January 2022

Accessibility to Peptidoglycan Is Important for the Recognition of Gram-Positive Bacteria in Drosophila

scientific article published on 01 May 2019

An adaptive non-local means filter for denoising live-cell images and improving particle detection

scientific article published on 3 July 2010

Brain Development: Machine Learning Analysis Of Individual Stem Cells In Live 3D Tissue

article

Bruno: a double turn-off for Oskar

scientific article published in March 2006

Building a scientific data grid with DiGS.

scientific article

Changes in bicoid mRNA anchoring highlight conserved mechanisms during the oocyte-to-embryo transition

scientific article

Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei

scientific article published on 17 January 2010

Collection and mounting of Drosophila embryos for imaging

scientific article published in April 2010

Correlative in-resin super-resolution and electron microscopy using standard fluorescent proteins

scientific article

CytoCensus, mapping cell identity and division in tissues and organs using machine learning

scientific article published on 19 May 2020

Dcas is required for importin-alpha3 nuclear export and mechano-sensory organ cell fate specification in Drosophila

scientific article published in April 2002

Distinguishing direct from indirect roles for bicoid mRNA localization factors

scientific article

Drosophila Hephaestus/polypyrimidine tract binding protein is required for dorso-ventral patterning and regulation of signalling between the germline and soma

scientific article

Drosophila Squid/hnRNP helps Dynein switch from a gurken mRNA transport motor to an ultrastructural static anchor in sponge bodies

scientific article published in October 2007

Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification ⬇️

scientific article published on April 11, 2012

Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction

scientific article

Drosophila gurken (TGFalpha) mRNA localizes as particles that move within the oocyte in two dynein-dependent steps

scientific article published in March 2003

Drosophila larval fillet preparation and imaging of neurons

scientific article published in April 2010

Drosophila macrophage preparation and screening

scientific article published in April 2010

Drosophila patterning is established by differential association of mRNAs with P bodies

scientific article

Drosophila sensory cilia lacking MKS proteins exhibit striking defects in development but only subtle defects in adults

scientific article published on 30 August 2016

Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles

scientific article

Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos

scientific article

Dynein anchors its mRNA cargo after apical transport in the Drosophila blastoderm embryo

scientific article published in July 2005

How the sea squirt nucleus tells mesoderm not to be endoderm

scientific article published on October 2010

Identifying and Searching for Conserved RNA Localisation Signals ⬇️

scientific article published on January 1, 2011

Imaging the migrating border cell cluster in living Drosophila egg chambers

scientific article

Imp and Syp RNA-binding proteins govern decommissioning of Drosophila neural stem cells

scientific article published on 29 August 2017

Imp/IGF2BP levels modulate individual neural stem cell growth and division through myc mRNA stability

scientific article published on 14 January 2020

In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization

scientific article published in September 2008

Intracellular mRNA localization: motors move messages.

scientific article

IsoSense: frequency enhanced sensorless adaptive optics through structured illumination

scientific article published on 15 March 2019

Isolation of Drosophila egg chambers for imaging

scientific article published in April 2010

Localized Translation of gurken/TGF-α mRNA during Axis Specification Is Controlled by Access to Orb/CPEB on Processing Bodies

scientific article published on 2 March 2016

Making the message clear: visualizing mRNA localization

scientific article

Nanometric depth resolution from multi-focal images in microscopy ⬇️

scientific article

Neuronal upregulation of Prospero protein is driven by alternative mRNA polyadenylation and Syncrip-mediated mRNA stabilisation

scientific article published on 23 March 2020

OMX: a new platform for multimodal, multichannel wide-field imaging.

scientific article

ParticleStats: open source software for the analysis of particle motility and cytoskeletal polarity

scientific article published on 11 June 2010

Perturbing nuclear transport in Drosophila eye imaginal discs causes specific cell adhesion and axon guidance defects

scientific article published in December 2001

Preparing individual Drosophila egg chambers for live imaging

scientific article

Python-Microscope – a new open-source Python library for the control of microscopes

scientific article published on 27 August 2021

RNA localization signals: deciphering the message with bioinformatics

scientific article published on 12 February 2007

RNA:RNA interaction can enhance RNA localization in Drosophila oocytes

scientific article published on 17 February 2012

Remodelling of cortical actin where lytic granules dock at natural killer cell immune synapses revealed by super-resolution microscopy

scientific article

Ribo-Pop: Simple, cost-effective, and widely applicable ribosomal RNA depletion

scientific article published on 05 August 2020

SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy

scientific article published on 3 November 2015

Subcellular mRNA localisation at a glance

scientific article published on May 2014

Super-Resolution Single Molecule FISH at the Drosophila Neuromuscular Junction.

scientific article published in January 2018

Super-resolution imaging of remodeled synaptic actin reveals different synergies between NK cell receptors and integrins

scientific article

Super-resolution microscopy using standard fluorescent proteins in intact cells under cryo-conditions

scientific article published on 4 June 2014

Syncrip/hnRNP Q influences synaptic transmission and regulates BMP signaling at the Drosophila neuromuscular synapse

scientific article

Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation

scientific article published on 01 March 2020

Testing Models of mRNA Localization Reveals Robustness Regulated by Reducing Transport between Cells

scientific article published on 24 October 2019

The new (dis)order in RNA regulation

scientific article

The salvador-warts-hippo pathway is required for epithelial proliferation and axis specification in Drosophila

scientific article

Transmitting the message: intracellular mRNA localization

scientific article published on February 2010

UAP56 RNA helicase is required for axis specification and cytoplasmic mRNA localization in Drosophila

scientific article

UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery

scientific article

gurken and the I factor retrotransposon RNAs share common localization signals and machinery

scientific article

mRNA localisation gets more complex.

scientific article published on June 2004

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