List of works by Oliver Hofmann

A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells.

scientific article published on 29 October 2013

A functional genomic screen reveals novel host genes that mediate interferon-alpha's effects against hepatitis C virus

scientific article

A genome-wide association search for type 2 diabetes genes in African Americans

scientific article published on 4 January 2012

A network of epigenetic regulators guides developmental haematopoiesis in vivo

scientific article

A promoter-level mammalian expression atlas

scientific article

A quick guide to large-scale genomic data mining

scientific article

ASTD: The Alternative Splicing and Transcript Diversity database

scientific article

Aberrant lipid metabolism disrupts calcium homeostasis causing liver endoplasmic reticulum stress in obesity

scientific article

An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates

scientific journal article

An atlas of combinatorial transcriptional regulation in mouse and man

scientific article

An in-depth comparison of the male pediatric and adult urinary proteomes

scientific article published on 22 May 2013

Aβ-accelerated neurodegeneration caused by Alzheimer's-associated ACE variant R1279Q is rescued by angiotensin system inhibition in mice

scientific article published on 01 September 2020

BRENDA: a resource for enzyme data and metabolic information

scientific article

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

scientific article

Capture of microRNA-bound mRNAs identifies the tumor suppressor miR-34a as a regulator of growth factor signaling

scientific article

Cell-specific translational profiling in acute kidney injury

scientific article published on 24 February 2014

Cell-specific translational profiling in acute kidneyinjury.

scientific article

Chronic endotoxin exposure produces airflow obstruction and lung dendritic cell expansion

journal article published in 2012

Clonal dynamics of native haematopoiesis

scientific article published on 5 October 2014

Comparison of illumina and 454 deep sequencing in participants failing raltegravir-based antiretroviral therapy

scientific article

Comparison of multiplexed reduced representation bisulfite sequencing (mRRBS) with the 450K Illumina Human BeadChip: from concordance to practical applications for methylomic profiling in epigenetic epidemiologic studies.

scientific article published on 18 March 2013

Computational selection and prioritization of candidate genes for fetal alcohol syndrome

scientific article

Concept-based annotation of enzyme classes

scientific article published on 20 January 2005

Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

scientific article

GA4GH: International policies and standards for data sharing across genomic research and healthcare

scientific article published on 10 November 2021

Genome-wide analysis of cancer/testis gene expression

scientific article

Genomic analyses identify molecular subtypes of pancreatic cancer

scientific article published on 24 February 2016

Human Proteinpedia enables sharing of human protein data

scientific article

Hypermutation In Pancreatic Cancer

scientific article

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

scientific article (publication date: 15 September 2010)

Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

scientific article

Integrating murine gene expression studies to understand obstructive lung disease due to chronic inhaled endotoxin

scientific article

Iterative sorting reveals CD133+ and CD133- melanoma cells as phenotypically distinct populations.

scientific article

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on computational biology (ISMB/ECCB) 2009

scientific article

Live coverage of scientific conferences using web technologies

scientific article

Mice and men: their promoter properties

scientific article

Mycoplasma Infection Alters Cancer Stem Cell Properties in Vitro

scientific article published on 30 October 2015

Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals

scientific article

Pathprinting: An integrative approach to understand the functional basis of disease

scientific article published on 26 July 2013

Phosphoproteomic profiling of mouse primary HSPCs reveals new regulators of HSPC mobilization

scientific article published on 30 June 2016

Population differences in transcript-regulator expression quantitative trait loci

scientific article (publication date: 2012)

Prenatal lead levels, plasma amyloid β levels, and gene expression in young adulthood

scientific article

Prioritisation of structural variant calls in cancer genomes

scientific article

Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of myasthenia gravis

scientific article

Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522.

scientific article published on 14 August 2014

Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment

scientific article published on 10 February 2017

Simplified ontologies allowing comparison of developmental mammalian gene expression

scientific article

Stem cell-like gene expression in ovarian cancer predicts type II subtype and prognosis

scientific article

The LIFEdb database in 2006

scientific article

The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework

scientific article

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

scientific article published on 24 November 2011

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Toward interoperable bioscience data

scientific article (publication date: 27 January 2012)

Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis

scientific article

VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research

scientific article published on 7 April 2016

Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development

scientific article published on 02 April 2021

miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'UTR microRNA recognition elements

scientific article

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