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List of works by Mart Krupovic

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

scientific article published on 04 September 2020

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

scientific article

A classification system for virophages and satellite viruses

scientific article

A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2.

scientific article

A network perspective on the virus world

scientific article

A new proposed taxon for double-stranded DNA viruses, the order "Ligamenvirales"

scientific article

A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2.

scientific article published on 18 January 2018

A novel group of diverse Polinton-like viruses discovered by metagenome analysis

scientific article

A packing for A-form DNA in an icosahedral virus

scientific article published on 21 October 2019

A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea

scientific article published in January 2011

A virus of hyperthermophilic archaea with a unique architecture among DNA viruses

scientific article

Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee

scientific article published in 2023

Accelerating expansion of the viral universe

scientific article published on 30 August 2013

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

scientific article published on 01 March 2019

Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

scientific article published in 2023

Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota

scientific article published on 4 March 2008

Archaeal tetrathionate hydrolase goes viral: secretion of a sulfur metabolism enzyme in the form of virus-like particles

scientific article published on 25 May 2012

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome ⬇️

scientific article published on July 23, 2012

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.

scientific article published on 11 December 2013

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 01 March 2020

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Binomial nomenclature for virus species: a consultation

scientific article published on 01 February 2020

Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements

scientific article

Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host

scientific article

Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems

scientific article

Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity

scientific article

Casposons: mobile genetic elements that gave rise to the CRISPR-Cas adaptation machinery

scientific article

Cellular domains and viral lineages

scientific article published on 13 August 2014

Cellular origin of the viral capsid-like bacterial microcompartments

scientific article published on 13 November 2017

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

scientific article published on 22 April 2017

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

scientific article

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

scientific article published on 01 September 2019

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

scientific article published on 20 August 2020

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses

scientific article

Classify viruses - the gain is worth the pain

scientific article published on 01 February 2019

Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria.

scientific article

Consensus statement: Virus taxonomy in the age of metagenomics

scientific article

Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses

scientific article

Correction to: Binomial nomenclature for virus species: a consultation

scientific article published on 17 February 2020

Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB

scientific article

Cressdnaviricota: a virus phylum unifying 7 families of Rep-encoding viruses with single-stranded, circular DNA genomes

scientific article published on 08 April 2020

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 22 July 2019

DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria.

scientific article published on 2 July 2014

Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes.

scientific article

Deep Roots and Splendid Boughs of the Global Plant Virome

scientific article published on 27 May 2020

Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut.

scientific article published on 13 November 2017

Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes

scientific article published on 09 November 2021

Does the evolution of viral polymerases reflect the origin and evolution of viruses?

scientific article published on 9 February 2009

Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly ⬇️

scientific article published on 02 July 2011

Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome

scientific article published on 20 July 2020

Eukaryotic-Like Virus Budding in Archaea

scientific article

Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads

scientific article

Evolution of adaptive immunity from transposable elements combined with innate immune systems

scientific article published on 9 December 2014

Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease

scientific article

Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses

scientific article

Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses

scientific article

Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery

scientific article (publication date: 2014)

Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire

scientific article published on 14 October 2019

Expanding the type IIB DNA topoisomerase family: identification of new topoisomerase and topoisomerase-like proteins in mobile genetic elements

scientific article published on 19 December 2019

Extracellular membrane vesicles harbouring viral genomes

scientific article

Fake virus particles generated by fluorescence microscopy.

scientific article published on 7 November 2012

First insights into the entry process of hyperthermophilic archaeal viruses.

scientific article published on 2 October 2013

Fusion of a superfamily 1 helicase and an inactivated DNA polymerase is a signature of common evolutionary history of Polintons, polinton-like viruses, Tlr1 transposons and transpovirons

scientific article

Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae.

scientific article

Geminiviruses: a tale of a plasmid becoming a virus

scientific article

Genetics for Pseudoalteromonas provides tools to manipulate marine bacterial virus PM2.

scientific article published on 14 December 2007

Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis.

scientific article published on September 2006

Genomics and biology of Rudiviruses, a model for the study of virus-host interactions in Archaea

scientific article published on February 2013

Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere

scientific article published on 29 November 2011

Genomoviridae: a new family of widespread single-stranded DNA viruses.

scientific article

Global Organization and Proposed Megataxonomy of the Virus World

scientific article published on 04 March 2020

Guidance for creating individual and batch latinized binomial virus species names

scientific article published in 2022

History of CRISPR-Cas from encounter with a mysterious repeated sequence to genome editing technology

scientific article

Holin of bacteriophage lambda: structural insights into a membrane lesion.

scientific article published on 28 June 2008

Homologous Capsid Proteins Testify to the Common Ancestry of Retroviruses, Caulimoviruses, Pseudoviruses, and Metaviruses

scientific article published on 29 March 2017

Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1

scientific article

Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids

scientific article

Integrated mobile genetic elements in Thaumarchaeota.

scientific article

Isolation and Characterization of Bacteriophages That Infect Citrobacter rodentium, a Model Pathogen for Intestinal Diseases

scientific article published on 08 July 2020

Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1.

scientific article published on 12 April 2013

Membrane vesicles in natural environments: a major challenge in viral ecology

scientific article published on 17 March 2015

Microviridae goes temperate: microvirus-related proviruses reside in the genomes of Bacteroidetes

scientific article published in 2011

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Model for a novel membrane envelope in a filamentous hyperthermophilic virus

scientific article published on 22 June 2017

Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing

scientific article published on 2 April 2015

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids

scientific article published on 31 July 2019

Multiple origins of viral capsid proteins from cellular ancestors

scientific article

Mysterious hexagonal pyramids on the surface of Pyrobaculum cells

scientific article published on 23 June 2015

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

scientific article published in 2023

Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses ⬇️

scientific article published on July 10, 2013

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures

article

New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities

scientific article published on 22 April 2020

Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species

scientific article published on 14 April 2019

Numerous cultivated and uncultivated viruses encode ribosomal proteins

scientific article published in Nature Communications

Order to the viral universe

scientific article

Origin of programmed cell death from antiviral defense?

scientific article published on 09 July 2019

Origin of viruses: primordial replicators recruiting capsids from hosts

scientific article published on 01 July 2019

Origins and Evolution of the Global RNA Virome

scientific article published on 27 November 2018

Origins and Evolution of the Global RNA Virome

scientific article published on 24 October 2018

Origins and evolution of viruses of eukaryotes: The ultimate modularity

scientific article

Ortervirales: A new viral order unifying five families of reverse-transcribing viruses

scientific article published on 4 April 2018

Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses.

scientific article published on 10 April 2018

Phages build anti-defence barriers

scientific article published on 01 January 2020

Plant virus movement proteins originated from jelly-roll capsid proteins

scientific article published in 2023

Plant viruses of the Amalgaviridae family evolved via recombination between viruses with double-stranded and negative-strand RNA genomes

scientific article published in 2015

Polintons, virophages and transpovirons: a tangled web linking viruses, transposons and immunity.

scientific article published on 30 June 2017

Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution

scientific article published on 22 December 2014

Polymyxin B induces lysis of marine pseudoalteromonads

scientific article published on 20 August 2007

Postcards from the edge: structural genomics of archaeal viruses

scientific article published on January 2012

Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins

scientific article published on 17 March 2010

Protein-protein interactions leading to recruitment of the host DNA sliding clamp by the hyperthermophilic Sulfolobus islandicus rod-shaped virus 2

scientific article published on 2 April 2014

Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria

scientific article published in 2007

Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity

scientific article published on 13 January 2016

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

scientific article published in 2022

Recombination between RNA viruses and plasmids might have played a central role in the origin and evolution of small DNA viruses.

scientific article

Reply to Holmes and Duchêne, "Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?": Deep Phylogenetic Analysis of RNA Viruses Is Highly Challenging but Not Meaningless

scientific article published on 16 April 2019

Self-synthesizing transposons: unexpected key players in the evolution of viruses and defense systems

scientific article

Sequence motifs recognized by the casposon integrase of Aciduliprofundum boonei

scientific article published on 01 July 2019

Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes

scientific article

Smacoviridae: a new family of animal-associated single-stranded DNA viruses

scientific article published on 23 March 2018

Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome

scientific article published in 2022

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea

scientific article published on 16 July 2019

Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile

scientific article published in Nature Communications

Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments

scientific article published on 05 August 2020

Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids

scientific article

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

scientific article published on 06 May 2019

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee

scientific article

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

scientific article published on 22 January 2018

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

scientific article published on 11 March 2020

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee

scientific article

Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018.

scientific article published on 21 April 2018

Taxonomy of the order Mononegavirales: update 2018.

scientific article published on 11 April 2018

The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing

scientific article

The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements

scientific article published on 25 June 2010

The LUCA and its complex virome

scientific article published on 14 July 2020

The Origin of Virions and Virocells: The Escape Hypothesis Revisited

The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea.

scientific article published on 20 May 2010

The depths of virus exaptation

The depths of virus exaptation

The enigmatic archaeal virosphere

scientific article published in November 2017

The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes

scientific article

The replication machinery of LUCA: common origin of DNA replication and transcription

scientific article published on 09 June 2020

Three families of Asgard archaeal viruses identified in metagenome-assembled genomes

scientific article published in 2022

Unification of the globally distributed spindle-shaped viruses of the Archaea

scientific article published on 11 December 2013

Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging.

scientific article published on 10 November 2017

Varidnaviruses in the Human Gut: A Major Expansion of the Order Vinavirales

Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

scientific article published on 10 April 2018

Virology. A virus that infects a hyperthermophile encapsidates A-form DNA

scientific article

Virology. Revealing virus-host interplay

scientific article

Virology: A parasite's parasite saves host's neighbours

scientific article

Virophages or satellite viruses?

scientific article

Virus evolution: how far does the double beta-barrel viral lineage extend?

scientific article

Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)

Virus-borne mini-CRISPR arrays are involved in interviral conflicts

scientific article published on 15 November 2019

Virus-mediated archaeal hecatomb in the deep seafloor

scientific article

Viruses Defined by the Position of the Virosphere within the Replicator Space

scientific article published on 01 September 2021

Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

scientific article published on 22 November 2017

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