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List of works by Lars Arvestad

A Bayesian method for analyzing lateral gene transfer.

scientific article

A novel method for forensic DNA investigations: repeat-type sequence analysis of tandemly repeated mtDNA in domestic dogs

scientific article published on 01 September 2000

Assembly scaffolding with PE-contaminated mate-pair libraries.

scientific article

Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction

scientific article published on 27 July 2005

BESST--efficient scaffolding of large fragmented assemblies.

scientific article

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

scientific article published in January 2003

Classification of DNA sequences using Bloom filters.

scientific article

Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota)

scientific article published on 06 July 2019

Efficient Methods for Estimating Amino Acid Replacement Rates

article

Estimation of reversible substitution matrices from multiple pairs of sequences

scientific article published on December 1997

Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms

scientific article published in January 2007

Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins.

scientific article

Evolution of a domain conserved in microtubule-associated proteins of eukaryotes ⬇️

scientific article published on September 23, 2008

Excap: maximization of haplotypic diversity of linked markers

scientific article published on 7 November 2013

Forensic informativity of ~3000 bp of coding sequence of domestic dog mtDNA.

scientific article published on 11 May 2014

GAM-NGS: genomic assemblies merger for next generation sequencing

scientific article

GenFamClust: an accurate, synteny-aware and reliable homology inference algorithm

scientific article

Genome-wide survey for biologically functional pseudogenes

scientific article

Identification of the cellulose synthase genes from the Oomycete Saprolegnia monoica and effect of cellulose synthesis inhibitors on gene expression and enzyme activity

scientific article published on 7 July 2009

Improved gap size estimation for scaffolding algorithms.

scientific article

MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2,6-dichlorobenzonitrile.

scientific article published on 19 September 2008

Quantitative synteny scoring improves homology inference and partitioning of gene families

scientific article

RecPhyloXML: a format for reconciled gene trees

article

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

scientific article published on 19 March 2009

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias

scientific article

The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants

scientific article published on 01 January 2020

The Norway spruce genome sequence and conifer genome evolution

scientific article

The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes.

scientific article published on 7 June 2005

VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

scientific article

alv: a console-based viewer for molecular sequence alignments

scientific article published on 07 November 2018

mtDNA Tandem Repeats in Domestic Dogs and Wolves: Mutation Mechanism Studied by Analysis of the Sequence of Imperfect Repeats

article

primetv: a viewer for reconciled trees

scientific article

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