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List of works by Richard A. Goldstein

A coarse-grained biophysical model of sequence evolution and the population size dependence of the speciation rate

scientific article published on 30 April 2015

A model of the mechanisms of language extinction and revitalization strategies to save endangered languages

scientific article published on February 2010

Amino acid coevolution induces an evolutionary Stokes shift.

scientific article

Analytic markovian rates for generalized protein structure evolution

scientific article

Assessing predictors of changes in protein stability upon mutation using self-consistency

scientific article

Assessing the accuracy of ancestral protein reconstruction methods

scientific article

Changing selective pressure during antigenic changes in human influenza H3.

scientific article

Charting the host adaptation of influenza viruses

scientific article

Depicting a protein's two faces: GPCR classification by phylogenetic tree-based HMMs

scientific article published on 01 November 2003

Detecting distant homologs using phylogenetic tree-based HMMs

scientific article published in August 2003

Dimerization in Aminergic G-Protein-Coupled Receptors: Application of a Hidden-Site Class Model of Evolution†

article

Emergent robustness in competition between autocatalytic chemical networks

scientific article

Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models ⬇️

scientific article published on December 29, 2011

Evolution of functionality in lattice proteins

scientific article published on January 2001

Evolution of response dynamics underlying bacterial chemotaxis ⬇️

scientific article (publication date: 16 August 2011)

Evolution of taxis responses in virtual bacteria: non-adaptive dynamics

scientific article

Finding Direction in the Search for Selection

scientific article published on 2 December 2016

Generalized protein tertiary structure recognition using associative memory Hamiltonians

scientific article published in December 1991

High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis

scientific article published in October 2018

Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination

scientific article published on 28 February 2019

Identifying changes in selective constraints: host shifts in influenza.

scientific article

Mixed cytomegalovirus genotypes in HIV positive mothers show compartmentalization and distinct patterns of transmission to infants

scientific article published on 31 December 2020

Nonadaptive Amino Acid Convergence Rates Decrease over Time.

scientific article

Observations of amino acid gain and loss during protein evolution are explained by statistical bias.

scientific article

On the thermodynamic hypothesis of protein folding ⬇️

scientific article published on May 12, 1998

Optimal chemotactic responses in stochastic environments

scientific article published on 23 June 2017

Optimal local propensities for model proteins

scientific article published on 01 August 1995

Optimization of a new score function for the generation of accurate alignments

scientific article published on 01 September 2002

Optimizing energy potentials for success in protein tertiary structure prediction.

scientific article

Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison

scientific article published in August 2002

Performance of an iterated T-HMM for homology detection

scientific article published on 25 March 2004

Population size dependence of fitness effect distribution and substitution rate probed by biophysical model of protein thermostability.

scientific article published on January 2013

Positive Selection Analysis of Overlapping Reading Frames Is Invalid

scientific article published on 30 June 2015

Positive selection in dNTPase SAMHD1 throughout mammalian evolution

scientific article published on 26 August 2019

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence

scientific article published on 01 July 2020

Predicting functional sites in proteins: site-specific evolutionary models and their application to neurotransmitter transporters

scientific article

Probabilistic reconstruction of ancestral protein sequences

scientific article

Probing conformational changes in neurotransmitter transporters: a structural context

scientific article published on October 2003

Reply to Jensen and Kowalik: Consideration of mixed infections is central to understanding HCMV intrahost diversity

scientific article published on 24 December 2019

SELECTIVE ADVANTAGE OF RECOMBINATION IN EVOLVING PROTEIN POPULATIONS: A LATTICE MODEL STUDY.

scientific article

Sequence entropy of folding and the absolute rate of amino acid substitutions.

scientific article published on 23 October 2017

Simple Biophysical Model Predicts Faster Accumulation of Hybrid Incompatibilities in Small Populations Under Stabilizing Selection

scientific article

Strong evidence for protein epistasis, weak evidence against it.

scientific article published on 20 March 2014

The distribution of structures in evolving protein populations

scientific article published on 01 January 2000

The evolution and evolutionary consequences of marginal thermostability in proteins ⬇️

scientific article published on February 18, 2011

The evolution of collective restraint: policing and obedience among non-conjugative plasmids

scientific article

The foldability landscape of model proteins

scientific article published on 01 October 1997

The neuronal replicator hypothesis

scientific article published in November 2010

The organization of two rRNA (rrn) operons of the slow-growing pathogen Mycobacterium celatum provides key insights into mycobacterial evolution

scientific article published on 31 January 2008

The structure of protein evolution and the evolution of protein structure.

scientific article

The tangled bank of amino acids

scientific article

Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 'Spanish' influenza pandemic virus.

scientific article

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses

scientific article published on 01 January 2020

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses

scientific article published on 6 December 2019

Why are proteins marginally stable?

scientific article published on 01 January 2002

Why are some proteins structures so common?

scientific article published on April 1996

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

scholarly article by Matthew W Dimmic et al published July 2002 in Journal of Molecular Evolution

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