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List of works by Kiyoko F Aoki-Kinoshita

2 nd FCCA Symposium/Annual Forum for Young Glyco-Scientists 2015

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

scientific article published on 27 October 2020

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

scientific article published in January 2005

A gram distribution kernel applied to glycan classification and motif extraction.

scientific article published in January 2006

A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks

scientific article

A weighted q-gram method for glycan structure classification

scientific article

An Efficient Unordered Tree Kernel and Its Application to Glycan Classification

An introduction to bioinformatics for glycomics research

scientific article

Analyzing Glycan-Binding Profiles Using Weighted Multiple Alignment of Trees

scientific article published on 01 January 2018

Analyzing glycan structure synthesis with the Glycan Pathway Predictor (GPP) Tool

scientific article published on January 2015

Analyzing glycan-binding patterns with the ProfilePSTMM Tool

scientific article published in January 2015

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Bioinformatics approaches in glycomics and drug discovery.

scientific article published on December 2006

CarbArrayART: a new software tool for carbohydrate microarray data storage, processing, presentation, and reporting

scientific article published on 28 March 2022

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.

scientific article

Development and application of an algorithm to compute weighted multiple glycan alignments

scientific article

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Extracting glycan motifs using a biochemically-weighted kernel ⬇️

scientific article published on December 21, 2011

Frequent glycan structure mining of influenza virus data revealed a sulfated glycan motif that increased viral infection

scientific article

From genomics to chemical genomics: new developments in KEGG

scientific article

Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006)

article

Gene annotation and pathway mapping in KEGG

scientific article published on 01 January 2007

GlyComb: A novel glycoconjugate data repository that bridges glycomics and proteomics

scientific article published in 2024

GlyGen data model and processing workflow

scientific article published on 23 April 2020

GlyGen: Computational and Informatics Resources for Glycoscience

scientific article published on 01 January 2020

GlyTouCan 1.0--The international glycan structure repository

scientific article

GlyTouCan: an accessible glycan structure repository.

scientific article published in October 2017

GlycanFormatConverter: a conversion tool for translating the complexities of glycans

scientific article published on 01 July 2019

GlycoPOST realizes FAIR principles for glycomics mass spectrometry data

scientific article published on 11 November 2020

GlycoRDF: an ontology to standardize glycomics data in RDF

scientific article

Glycoinformatics

Glycomic analysis using KEGG GLYCAN.

scientific article published in January 2015

Identification of genes required for neural-specific glycosylation using functional genomics

scientific article

Identification of proteasome components required for apical localization of Chaoptin using functional genomics

scientific article

Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans.

scientific article published on 19 April 2017

Implementation of linked data in the life sciences at BioHackathon 2011

scientific article

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules

scientific article

Introducing glycomics data into the Semantic Web.

scientific article

Introduction to Informatics in Glycoprotein Analysis ⬇️

scientific article published on 01 January 2013

KEGG as a glycome informatics resource

scientific article

Knowledge discovery for pancreatic cancer using inductive logic programming

scientific article published in August 2014

LM-GlycomeAtlas Ver. 1.0: A Novel Visualization Tool for Lectin Microarray-Based Glycomic Profiles of Mouse Tissue Sections

scientific article published on 15 August 2019

MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns

scientific article published on 11 May 2018

MIRAGE: the minimum information required for a glycomics experiment

scientific article

Mining Frequent Subtrees in Glycan Data Using the Rings Glycan Miner Tool ⬇️

scientific article published on January 1, 2013

Modeling genetic regulatory networks: a delay discrete dynamical model approach

On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines

Overview of KEGG applications to omics-related research

scientific article published in 2006

Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.

scientific article

ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains

scientific article published in July 2006

Symbol Nomenclature for Graphical Representations of Glycans

scientific article

Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns

scientific article published in Nature Communications

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

scientific article

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

scientific article (publication date: 21 August 2010)

The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences

scientific article published on 22 June 2020

The GlySpace Alliance: toward a collaborative global glycoinformatics community

scientific article published on 01 January 2020

The Glycome Analytics Platform: an integrative framework for glycobioinformatics.

scientific article published on 10 June 2016

The GlycomeAtlas tool for visualizing and querying glycome data

scientific article

The Lectin Frontier Database (LfDB), and data generation based on frontal affinity chromatography

scientific article

The RINGS resource for glycome informatics analysis and data mining on the Web.

scientific article

The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics

scientific article published on February 2013

The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application

scientific article published on 01 August 2021

The international glycan repository GlyTouCan version 3.0.

scientific article published on 30 October 2020

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

scientific article published on 22 November 2016

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets

scientific article

Toolboxes for a standardised and systematic study of glycans

scientific article

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

scientific article published on 22 July 2019

Trends and Future Perspectives for Glycoinformatics

UniCarbKB: building a knowledge platform for glycoproteomics

scientific article (publication date: 13 November 2013)

UniCarbKB: putting the pieces together for glycomics research

scientific article published on 19 September 2011

Updates to the Symbol Nomenclature for Glycans guidelines

scientific article published on 01 August 2019

Using Databases and Web Resources for Glycomics Research ⬇️

scientific article published on January 16, 2013

Using glycome databases for drug discovery ⬇️

scientific article published on August 1, 2008

WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures

scientific article

WURCS: the Web3 unique representation of carbohydrate structures.

scientific article

[Introduction to glycome informatics]

scientific article published on 01 November 2008

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