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List of works by Robert B. Russell

3did: interacting protein domains of known three-dimensional structure

scientific article

A careful disorderliness in the proteome: sites for interaction and targets for future therapies.

scientific article published on 20 February 2008

A complex prediction: three-dimensional model of the yeast exosome.

scientific article published on July 2002

A dynamic structural model for estrogen receptor-alpha activation by ligands, emphasizing the role of interactions between distant A and E domains

scientific article published in November 2002

A lipid-binding domain in Wnt: a case of mistaken identity?

scientific article published on 01 October 1999

A model for statistical significance of local similarities in structure.

scientific article

A more complete, complexed and structured interactome.

scientific article published on 15 June 2007

A more structured metabolome.

scientific article published in November 2009

A novel binding site in catalase is suggested by structural similarity to the calycin superfamily.

scientific article published in February 1996

A recurrent 11q aberration pattern characterizes a subset of MYC-negative high-grade B-cell lymphomas resembling Burkitt lymphoma

scientific article

A shortcut to peptides to modulate platelets

scientific article published on 01 February 2007

A structural perspective on protein-protein interactions.

scientific article

A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae

scientific article

A systems biology approach towards the prediction of ciliopathy mechanisms.

scientific article published on 13 July 2015

Accurate prediction of peptide binding sites on protein surfaces.

scientific article

Amino-Acid Properties and Consequences of Substitutions

article

An RNAi screen identifies KIF15 as a novel regulator of the endocytic trafficking of integrin

scientific article published on 21 March 2014

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.

scientific article

An organelle-specific protein landscape identifies novel diseases and molecular mechanisms

scientific journal article

Analysis and prediction of functional sub-types from protein sequence alignments.

scientific article published in October 2000

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

scientific article (publication date: 16 December 2005)

Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures

scientific article

CASH--a beta-helix domain widespread among carbohydrate-binding proteins

scientific article published in February 2002

Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen

scientific article

CiliaCarta: An integrated and validated compendium of ciliary genes

scientific article published on 16 May 2019

Classification of protein folds

scientific article published on 01 July 2007

Classification of protein folds.

scientific article

Combinations of protein-chemical complex structures reveal new targets for established drugs

scientific article

Combining specificity determining and conserved residues improves functional site prediction

scientific article

Computational identification of novel amino-acid interactions in HIV Gag via correlated evolution.

scientific article

Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains

scientific article (publication date: 8 June 1992)

Content disputes in Wikipedia reflect geopolitical instability

scientific article (publication date: 2011)

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

scientific article published on 28 February 2012

Crystal structure of an archaeal class I aldolase and the evolution of (betaalpha)8 barrel proteins

scientific article

DILIMOT: discovery of linear motifs in proteins

scientific article

DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control

scientific article

Data Sources for Signature Discovery in Toxicology

article

Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.

scientific article

Differential localization of coatomer complex isoforms within the Golgi apparatus.

scholarly article

Dissecting the genomic complexity underlying medulloblastoma

scientific article

Domain recombination: a workhorse for evolutionary innovation.

scientific article

Editorial

Evolutionary relationship between the bacterial HPr kinase and the ubiquitous PEP-carboxykinase: expanding the P-loop nucleotidyl transferase superfamily

article

Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization.

scientific article published in May 2004

Finding functional sites in structural genomics proteins.

scientific article

Fold recognition from sequence comparisons.

scientific article published on January 2001

Fold recognition without folds

scientific article

From proteomic data to networks: statistics and methods reveal ciliary protein interaction landscape

scientific article published on 13 July 2015

Geminate structures of African cassava mosaic virus.

scientific article

Generation and interpretation of protein sequence and structural multiple alignments

Genes encoding members of the JAK-STAT pathway or epigenetic regulators are recurrently mutated in T-cell prolymphocytic leukaemia.

scientific article

Genomics, proteomics and bioinformatics: all in the same boat

scientific article

Getting the most from your protein sequence

article

Harry Potter and the structural biologist's (Key)stone.

scientific article published on January 2006

Hb M Dothan [beta 25/26 (B7/B8)/(GGT/GAG-->GAG//Gly/Glu-->Glu]; a new mechanism of unstable methemoglobin variant and molecular characteristics.

scientific article published on 15 September 2009

Identification of Drosophila MicroRNA targets

scientific article

Identification of distant homologues of fibroblast growth factors suggests a common ancestor for all β-trefoil proteins 1 1Edited by J. Thornton

article

Illuminating drug discovery with biological pathways

scientific article

Impact of genome reduction on bacterial metabolism and its regulation.

scientific article published in November 2009

Insights into cancer severity from biomolecular interaction mechanisms

scientific article

InterPreTS: protein interaction prediction through tertiary structure.

scientific article

Interactions between the Fyn SH3-domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and affinity.

scientific article

Interrogating protein interaction networks through structural biology

scientific article

Linear motifs: evolutionary interaction switches.

scientific article

Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions.

scientific article

Mechnetor: a web server for exploring protein mechanism and the functional context of genetic variants

scientific article published on 01 July 2021

Modular architecture of nucleotide-binding pockets.

scientific article

Molecular dissection of human Argonaute proteins by DNA shuffling.

scientific article

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

scientific article (publication date: October 1992)

Mutagenesis of N-terminal residues of feline foamy virus Gag reveals entirely distinct functions during capsid formation, particle assembly, Gag processing and budding

scientific article published on 22 August 2016

Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.

scientific article published on 4 August 2012

New roles for structure in biology and drug discovery

article

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

scientific article

PepSite: prediction of peptide-binding sites from protein surfaces

scientific article published on 16 May 2012

Peptide-mediated interactions in biological systems: new discoveries and applications

article

Peptides mediating interaction networks: new leads at last

scientific article

Potential artefacts in protein-interaction networks

article

Predicting function from structure: examples of the serine protease inhibitor canonical loop conformation found in extracellular proteins.

scientific article

Predictions without templates: New folds, secondary structure, and contacts in CASP5 ⬇️

scientific article published on January 1, 2003

Principles of microRNA-target recognition

scientific article

Proline-Rich Regions in Transcriptional Complexes: Heading in Many Directions

scientific article published on 16 January 2007

ProtChemSI: a network of protein-chemical structural interactions

scientific article

Protein complexes: structure prediction challenges for the 21st century

scientific article

Protein disorder prediction: implications for structural proteomics

scientific article (publication date: November 2003)

Protein fold irregularities that hinder sequence analysis.

scientific article published in June 1998

Protein fold recognition by mapping predicted secondary structures.

scientific article

Proteome organization in a genome-reduced bacterium

scientific journal article

Proteome survey reveals modularity of the yeast cell machinery

scientific article

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

article

Recurrent mutation of JAK3 in T-cell prolymphocytic leukemia

scientific article published on 21 January 2014

Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing

scientific article

RecurrentRHOAmutations in pediatric Burkitt lymphoma treated according to the NHL-BFM protocols

article

SMARCA4-mutated atypical teratoid/rhabdoid tumors are associated with inherited germline alterations and poor prognosis

article

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

scientific article

Structural similarity to bridge sequence space: finding new families on the bridges

scientific article published on May 2005

Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.

scientific article

Structural systems biology: modelling protein interactions.

scientific article

Structure of the full-length HPr kinase/phosphatase from Staphylococcus xylosus at 1.95 A resolution: Mimicking the product/substrate of the phospho transfer reactions

scientific article

Structure prediction. How good are we?

scientific article

Structure-based systems biology: a zoom lens for the cell.

scientific article

Subunit architecture of intact protein complexes from mass spectrometry and homology modeling.

scientific article

SuperTarget and Matador: resources for exploring drug-target relationships

scientific article

Supersites within superfolds. Binding site similarity in the absence of homology

scientific article

Swaposins: circular permutations within genes encoding saposin homologues

scientific article published in May 1995

Synthesis of a new family of water-soluble tertiary phosphine ligands and of their rhodium(I) complexes; olefin hydrogenation in aqueous and biphasic media

scholarly article by Eric Ranaud et al published January 1991 in Journal of Organometallic Chemistry

Systematic Discovery of In Vivo Phosphorylation Networks

scientific article (publication date: June 2007)

Systematic discovery of new recognition peptides mediating protein interaction networks

scientific article

Systematic exploration of the ciliary protein landscape by large-scale affinity proteomics.

scientific article published on 13 July 2015

Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans

scientific article

Systems Biology: Understanding the Biological Mosaic

scientific article published in 2005

Taking the mystery out of biological networks.

scientific article

Targeting and tinkering with interaction networks

scientific article

Targeting and tinkering with interaction networks.

scientific article published on 6 March 2008

Ten thousand interactions for the molecular biologist

article

The PCBP1 gene encoding poly(rC) binding protein I is recurrently mutated in Burkitt lymphoma

scientific article published on 14 July 2015

The Relationship Between Sequence and Interaction Divergence in Proteins ⬇️

scientific article published on October 3, 2003

The hard cell: from proteomics to a whole cell model

scientific article published on 30 May 2007

The limits of protein secondary structure prediction accuracy from multiple sequence alignment.

scientific article

The mutational pattern of primary lymphoma of the central nervous system determined by whole-exome sequencing

scientific article published on 5 September 2014

The third dimension for protein interactions and complexes.

scientific article

The three-dimensional molecular structure of the desmosomal plaque

scientific article

Topic pages: PLoS Computational Biology meets Wikipedia

scientific article published in 2012

Understanding and predicting protein assemblies with 3D structures

scientific article

Unraveling Mechanisms of Toxicity with the Power of Pathways: ToxWiz Tool as an Illustrative Example

Book chapter

WD40 proteins propel cellular networks.

scientific article

bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila

scientific article (publication date: 4 April 2003)

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