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List of works by Silvia Restrepo

A One Health Perspective to Recognize Fusarium as Important in Clinical Practice

scientific article published on 20 October 2020

A comparison between functional frequency and metabolic flows framed by biogeochemical cycles in metagenomes: The case of “El Coquito” hot spring located at Colombia's national Nevados park

article

A complex population structure of the cassava pathogen Xanthomonas axonopodis pv. manihotis in recent years in the Caribbean Region of Colombia

scientific article

A network model for biofilm development in Escherichia coli K-12.

scientific article

A new method for designing degenerate primers and its use in the identification of sequences in Brachiaria showing similarity to apomixis-associated genes

scientific article published on 14 June 2010

A unigene catalogue of 5700 expressed genes in cassava.

scientific article published in November 2004

Amatoxin and phallotoxin composition in species of the genus Amanita in Colombia: A taxonomic perspective

article

An EST resource for cassava and other species of Euphorbiaceae

scientific article published in November 2004

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis

scientific article published on 25 March 2019

An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1.

scientific article

Analysis of Metabolic Functionality and Thermodynamic Feasibility of a Metagenomic Sample from “El Coquito” Hot Spring

article

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

scientific article

Application of Genome Studies of Coffee Rust

article by Marco Cristancho et al published 2014 in Advances in Intelligent Systems and Computing

Assembly and Analysis of Differential Transcriptome Responses of Hevea brasiliensis on Interaction with Microcyclus ulei

scientific article published on 19 August 2015

Biological and molecular characterization of the response of tomato plants treated with Trichoderma koningiopsis

article

Caracterización morfológica y molecular del antagonismo entre el endofito Diaporthe sp. aislado de frailejón (Espeletia sp.) y el fitopatógeno Phytophthora infestans

scientific article published on 26 July 2009

Characterization of Phytophthora infestans populations in Colombia: first report of the A2 mating type.

scientific article published in January 2009

Characterization of cellulases of fungal endophytes isolated from Espeletia spp.

scientific article

Characterization of pathotypes among isolates of Xanthomonas axonopodis pv. manihotis in Colombia

scholarly article by Silvia Restrepo et al published December 2000 in Plant Pathology

Characterization of the first Batrachochytrium dendrobatidis isolate from the Colombian Andes, an amphibian biodiversity hotspot.

scientific article

Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to Phytophthora infestans.

scientific article published on 9 February 2013

Colonization of roots of cultivated Solanum lycopersicum by dark septate and other ascomycetous endophytes

scientific article published on 09 February 2011

Comparative analyses of potato expressed sequence tag libraries

scientific article

Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data

scientific article (publication date: 4 June 2013)

Computational biology in Colombia

scientific article

Computational models in plant-pathogen interactions: the case of Phytophthora infestans

scientific article

De novo pyrimidine biosynthesis in the oomycete plant pathogen Phytophthora infestans

scientific article published on 18 December 2013

Defense gene expression patterns of three SAR-induced tomato cultivars in the field

article

Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina A response to ‘Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands’ (Oliva et al., 2010)

article

Defining the phylogenetic position of Amanita species from Andean Colombia

scientific article

Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains

scientific article published on 3 November 2011

Determining Whether Geographic Origin and Potato Genotypes Shape the Population Structure of Phytophthora infestans in the Central Region of Colombia

scientific article published on 21 November 2018

Developing a taxonomic identification system of Phytophthora species based on microsatellites

scientific article published on 29 November 2012

Development of a genetic tool for functional screening of anti-malarial bioactive extracts in metagenomic libraries

scientific article published on 4 June 2015

Differential PbP27 expression in the yeast and mycelial forms of the Paracoccidioides brasiliensis species complex.

scientific article

Differential Susceptibility of Tree Tomato (Solanum betaceum) Cultivars to Late Blight Caused by Phytophthora betacei

scientific article published on 10 February 2020

Discovery of Phytophthora infestans genes expressed in planta through mining of cDNA libraries

scientific article

Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring

scientific article published on 6 September 2017

Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring

scientific article published on 20 December 2017

Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes

scientific article published on 15 December 2017

Effects of dark septate endophytes on tomato plant performance

article

Entomopathogens of Amazonian stick insects and locusts are members of the Beauveria species complex (Cordyceps sensu stricto).

scientific article

Evaluation of adult chronic Chagas' heart disease diagnosis by molecular and serological methods

scientific article

Evolutionary Origins of Rhizarian Parasites

scientific article published on 16 December 2015

Exploring the biocontrol potential of fungal endophytes from an Andean Colombian Paramo ecosystem

First Report of Colletotrichum kahawae subsp. ciggaro Causing Anthracnose Disease on Tree Tomato in Cundinamarca, Colombia

scholarly article by P. Rojas et al published October 2018 in Plant Disease

Five new species of entomopathogenic fungi from the Amazon and evolution of neotropical Ophiocordyceps

scientific article published on 8 July 2015

Fusarium species detected in onychomycosis in Colombia

scientific article

Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray.

scientific article

Gene profiling in partially resistant and susceptible near-isogenic tomatoes in response to late blight in the field.

scientific article

Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase.

scientific article

Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans

scientific article published on 09 April 2019

Genetic diversity of Phytophthora infestans in the Northern Andean region

scientific article

Genetic structure and population dynamics of Xanthomonas axonopodis pv. manihotis in Colombia from 1995 to 1999.

scientific article

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome-Wide Association Study Identifies Single Nucleotide Polymorphism Markers Associated with Mycelial Growth (at 15, 20, and 25°C), Mefenoxam Resistance, and Mating Type in Phytophthora infestans

scientific article published on 02 March 2020

Genomes-based phylogeny of the genus Xanthomonas

scientific article

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

scientific article

Genotyping of Fusarium Isolates from Onychomycoses in Colombia: Detection of Two New Species Within the Fusarium solani Species Complex and In Vitro Antifungal Susceptibility Testing

scientific article

Identification of genes in cassava that are differentially expressed during infection with Xanthomonas axonopodis pv. manihotis

scientific article

Identification of transcription factor genes and their correlation with the high diversity of stramenopiles

scientific article

Is the Phenomenon of Mefenoxam-Acquired Resistance in Phytophthora infestans Universal?

scientific article published on 25 November 2019

Isoenzyme characterization of proteases and amylases and partial purification of proteases from filamentous fungi causing biodeterioration of industrial paper

article

Isolation and characterization of two strains of Fusarium oxysporum causing potato dry rot in Solanum tuberosum in Colombia

scientific article published on 4 May 2011

Lecanicillium sabanense sp. nov. (Cordycipitaceae) a new fungal entomopathogen of coccids

scientific article

Mesoscale Modeling of the Bacillus Thuringiensis Sporulation Network Based on Stochastic Kinetics and Its Application for in Silico Scale-Down

Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem.

scientific article published on 8 January 2016

Mycofier: a new machine learning-based classifier for fungal ITS sequences

scientific article

New Therapeutic Candidates for the Treatment of Malassezia pachydermatis -Associated Infections

scientific article published on 17 March 2020

Novel protocol for persister cells isolation.

scientific article

Phenotypic and Genotypic Characterization of <i>Phytophthora infestans</i> Isolates Associated with Tomato and Potato Crops in Colombia

scientific article published in 2022

Phylogeography and molecular epidemiology of Papaya ringspot virus

scientific article (publication date: August 2011)

Physalis peruviana responses to Phytophthora infestans are typical of an incompatible interaction

Physiological and molecular characterization of Phytophthora infestans isolates from the Central Colombian Andean Region

scientific article published on 2 October 2012

Physiological and molecular characterization of atypical isolates of Malassezia furfur

scientific article published on 29 October 2008

Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers

scientific article

Production of Polyunsaturated Fatty Acids and Lipids from Autotrophic, Mixotrophic and Heterotrophic cultivation of Galdieria sp. strain USBA-GBX-832

scientific article published on 25 July 2019

Recent progress in the characterization of molecular determinants in the Xanthomonas axonopodis pv. manihotis-cassava interaction

scientific article

Recovery of mitosporic fungi actively growing in soils after bacterial bioremediation of oily sludge and their potential for removing recalcitrant hydrocarbons

article published in 2011

Resistance spectrum of selected Manihot esculenta genotypes under field conditions

Seborrheic dermatitis: predisposing factors and ITS2 secondary structure for Malassezia phylogenic analysis

scientific article published on 15 August 2013

Selection of antagonistic bacteria isolated from the Physalis peruviana rhizosphere against Fusarium oxysporum

scientific article published on 20 July 2011

Speciation in fungal and oomycete plant pathogens

scientific article

Species from theColletotrichum acutatum,Colletotrichum boninenseandColletotrichum gloeosporioidesspecies complexes associated with tree tomato and mango crops in Colombia

article

Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus

scientific article

Surviving chytridiomycosis: differential anti-Batrachochytrium dendrobatidis activity in bacterial isolates from three lowland species of Atelopus

scientific article

TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale

scientific article published in 2021

TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants

scientific article

Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions

scientific article

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. ⬇️

scientific article

The plant pathogen Phytophthora andina emerged via hybridization of an unknown Phytophthora species and the Irish potato famine pathogen, P. infestans

scientific article published in 2011

Two Clonal Species of Phytophthora Associated to Solanaceous Crops Coexist in Central and Southern Colombia

scientific article published on 03 June 2020

Virulence Gene Expression in Malassezia spp from Individuals with Seborrheic Dermatitis

article

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