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List of works by Kenneth Bryan

Application of simulated annealing to the biclustering of gene expression data

scientific article

BALBOA: Extending Bicluster Analysis to Classify ORFs using Expression Data

Biclustering of Expression Data Using Simulated Annealing

Bottom-Up Biclustering of Expression Data

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

scientific article

Chromosomal and microRNA expression patterns reveal biologically distinct subgroups of 11q- neuroblastoma

scientific article

Co-localization of the oncogenic transcription factor MYCN and the DNA methyl binding protein MeCP2 at genomic sites in neuroblastoma.

scientific article

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

scientific article published on 19 July 2016

Differential DNA methylation patterns define status epilepticus and epileptic tolerance.

scientific article published on February 2012

Differential DNA methylation profiles of coding and non-coding genes define hippocampal sclerosis in human temporal lobe epilepsy.

scientific article published on 30 December 2014

Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis

scientific article

Dissection of the oncogenic MYCN transcriptional network reveals a large set of clinically relevant cell cycle genes as drivers of neuroblastoma tumorigenesis

scientific article

DyNet: visualization and analysis of dynamic molecular interaction networks

scientific article

Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components

scientific article published on 09 August 2017

Expressional alterations in functional ultra-conserved non-coding RNAs in response to all-trans retinoic acid--induced differentiation in neuroblastoma cells.

scientific article

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data.

scientific article

Genome-wide DNA methylation analysis of neuroblastic tumors reveals clinically relevant epigenetic events and large-scale epigenomic alterations localized to telomeric regions

article

Global MYCN transcription factor binding analysis in neuroblastoma reveals association with distinct E-box motifs and regions of DNA hypermethylation

scientific article

HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

scientific article

Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37.

scientific article published on 21 February 2018

MetaFIND: a feature analysis tool for metabolomics data.

scientific article

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A.

scientific article published on 7 March 2013

MiRNA-335 suppresses neuroblastoma cell invasiveness by direct targeting of multiple genes from the non-canonical TGF-β signalling pathway

scientific article published in March 2012

MicroRNA mediates DNA demethylation events triggered by retinoic acid during neuroblastoma cell differentiation

scientific article published on 14 September 2010

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

scientific article

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model

scientific article

MicroRNA-184 inhibits neuroblastoma cell survival through targeting the serine/threonine kinase AKT2

scientific article

MicroRNA-204 increases sensitivity of neuroblastoma cells to cisplatin and is associated with a favourable clinical outcome

scientific article published on 14 August 2012

MicroRNA-204 increases sensitivity of neuroblastoma cells to cisplatin and is associated with a favourable clinical outcome.

scientific article published on 25 September 2012

MicroRNA-542-5p as a novel tumor suppressor in neuroblastoma ⬇️

scientific article published on April 1, 2011

MicroRNAs 10a and 10b are potent inducers of neuroblastoma cell differentiation through targeting of nuclear receptor corepressor 2 ⬇️

scientific article published on January 7, 2011

Modulation of neuroblastoma disease pathogenesis by an extensive network of epigenetically regulated microRNAs

scientific article

Parallel integration of heterogeneous genome-wide data sources

Post-transcriptional dysregulation by miRNAs is implicated in the pathogenesis of gastrointestinal stromal tumor [GIST]

scientific article published in 2013

Therapeutic targeting of miRNAs in neuroblastoma

scientific article published on September 2010

Unsupervised retrieval of attack profiles in collaborative recommender systems

Using biological networks to integrate, visualize and analyze genomics data

scientific article

Widespread dysregulation of MiRNAs by MYCN amplification and chromosomal imbalances in neuroblastoma: association of miRNA expression with survival

scientific article

miRNA expression profiling enables risk stratification in archived and fresh neuroblastoma tumor samples

scientific article

miRNA expression profiling of the murine TH-MYCN neuroblastoma model reveals similarities with human tumors and identifies novel candidate miRNAs

scientific article published on 2 December 2011

miRNA profiles as a predictor of chemoresponsiveness in Wilms' tumor blastema

scientific article

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