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List of works by Mik Black

A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels.

scientific article

A New Role for ERα: Silencing via DNA Methylation of Basal, Stem Cell, and EMT Genes

scientific article published on 15 November 2016

A Predictor of Early Disease Recurrence in Patients With Breast Cancer Using a Cell-free RNA and Protein Liquid Biopsy

scientific article published on 22 August 2019

A bioinformatics workflow for detecting signatures of selection in genomic data

scientific article

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification.

scientific article published on 20 March 2017

A proteomic approach identifies early pregnancy biomarkers for preeclampsia: novel linkages between a predisposition to preeclampsia and cardiovascular disease.

scientific article

A statistical model to identify differentially expressed proteins in 2D PAGE gels

scientific article

Abstract 1116: Sleeping Beauty mutagenesis identifies genes and pathways that cooperate with BrafV600E in melanoma initiation and progression

scientific article

Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations

scientific article published on 27 February 2018

Allosteric AKT Inhibitors Target Synthetic Lethal Vulnerabilities in E-Cadherin-Deficient Cells

scientific article published on 13 September 2019

Altered transcription of murine genes induced in the small bowel by administration of probiotic strain Lactobacillus rhamnosus HN001.

scientific article published on 28 February 2014

An altered pattern of circulating apolipoprotein E3 isoforms is implicated in preeclampsia

scientific article published on 25 August 2008

An iron regulatory gene signature predicts outcome in breast cancer.

scientific article published on 29 August 2011

Analysis of the DISC1 translocation partner (11q14.3) in genetic risk of schizophrenia

scientific article published on 4 September 2012

Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq

scientific article published in August 2016

Association of SLC2A9 genotype with phenotypic variability of serum urate in pre-menopausal women

scientific article published on 14 October 2015

Bulk and Single-Cell Profiling of Breast Tumors Identifies TREM-1 as a Dominant Immune Suppressive Marker Associated With Poor Outcomes

scientific article published on 08 December 2021

CNVrd, a read-depth algorithm for assigning copy-number at the FCGR locus: population-specific tagging of copy number variation at FCGR3B

scientific article published on 30 April 2013

Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments

scientific article published on 01 December 2002

Circulating tumor DNA is a sensitive marker for routine monitoring of treatment response in advanced colorectal cancer

scientific article published on 21 September 2020

Clinical risk prediction for pre-eclampsia in nulliparous women: development of model in international prospective cohort

scientific article

Clinico-pathological factors influencing lymph node yield in colorectal cancer and impact on survival: analysis of New Zealand Cancer Registry data

scientific article

Combined genomic and phenotype screening reveals secretory factor SPINK1 as an invasion and survival factor associated with patient prognosis in breast cancer

scientific article

Comparison of Roche Cell-Free DNA collection Tubes ® to Streck Cell-Free DNA BCT ® s for sample stability using healthy volunteers

scientific article published on 18 June 2019

Context-specific gene regulatory networks subdivide intrinsic subtypes of breast cancer

scientific article

Control of the False Discovery Rate Applied to the Detection of Positively Selected Amino Acid Sites

article

Copy number variants implicate cardiac function and development pathways in earthquake-induced stress cardiomyopathy

scientific article published on 15 May 2018

Copy number variants implicate cardiac function and development pathways in earthquake-induced stress cardiomyopathy

article

Copy number variants in the sheep genome detected using multiple approaches

scientific article

Cyclin E2 overexpression is associated with endocrine resistance but not insensitivity to CDK2 inhibition in human breast cancer cells.

scientific article published on 7 May 2012

Differential Gene Expression in Cultured Osteoblasts and Bone Marrow Stromal Cells From Patients With Paget's Disease of Bone

scientific article published on 13 November 2006

Distinctive subpopulations of stromal cells are present in human lymph nodes infiltrated with melanoma

scientific article published on 24 June 2020

Dual roles for immune metagenes in breast cancer prognosis and therapy prediction

scientific article

Duration of sexual relationship and its effect on preeclampsia and small for gestational age perinatal outcome

scientific article

E-cadherin loss alters cytoskeletal organization and adhesion in non-malignant breast cells but is insufficient to induce an epithelial-mesenchymal transition

scientific article

E-cadherin-deficient cells have synthetic lethal vulnerabilities in plasma membrane organisation, dynamics and function

scientific article published on 31 July 2018

Early pregnancy prediction of preeclampsia in nulliparous women, combining clinical risk and biomarkers: the Screening for Pregnancy Endpoints (SCOPE) international cohort study

scientific article published in September 2014

Erratum to: JMJD6 is a driver of cellular proliferation and motility and a marker of poor prognosis in breast cancer

scientific article published on 28 March 2017

Estimating disease prevalence in the absence of a gold standard

scientific article published in September 2002

Evaluating accuracy of diagnostic tests with intermediate results in the absence of a gold standard

scientific article published on 5 December 2012

Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data

scientific article

Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers

Frequency of CYP2C9 polymorphisms in Polynesian people and potential relevance to management of gout with benzbromarone

scientific article published on 7 August 2013

Functional impairment of infiltrating T cells in human colorectal cancer

scientific article published on 26 September 2016

Gene expression profiling of breast tumours from New Zealand patients

scientific article

Genetic sex assignment in wild populations using GBS data: a statistical threshold approach.

scientific article published on 14 February 2018

Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer

scientific article

Genomic selection of reference genes for real-time PCR in human myocardium

scientific article

Germline mutations and somatic inactivation of TRIM28 in Wilms tumour.

scientific article published on 18 June 2018

Heterologous hybridisation to a Pinus microarray: profiling of gene expression in Pinus radiata saplings exposed to ethephon

article

High-Dimensional Mass Cytometric Analysis Reveals an Increase in Effector Regulatory T Cells as a Distinguishing Feature of Colorectal Tumors

scientific article published on 06 February 2019

Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development

scientific article published on 24 July 2017

Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinisation using 17α-methyltestoterone

scientific article published on 20 December 2017

Immune gene signatures and tumor intrinsic markers delineate novel immunogenic subtypes of breast cancer

scientific article published on 6 November 2014

Immunogenic Subtypes of Breast Cancer Delineated by Gene Classifiers of Immune Responsiveness

scientific article published on 28 April 2016

Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation

article

Increased gene expression variability in BRCA1-associated and basal-like breast tumours

scientific article published on 21 July 2021

Incremental cost-effectiveness ratio and incremental net-health benefit: two sides of the same coin

scientific article published in October 2001

Inflammatory and regulatory T cells contribute to a unique immune microenvironment in tumor tissue of colorectal cancer patients.

scientific article

Influence of age and site of disease on lymph node yield in colorectal cancer

scientific article published on 6 June 2014

Insertional mutagenesis defines drivers and evolutionary relationships in pancreatic cancer metastasis

scientific article

Interactions between immunity, proliferation and molecular subtype in breast cancer prognosis

scientific article published on 29 April 2013

JMJD6 is a driver of cellular proliferation and motility and a marker of poor prognosis in breast cancer.

scientific article

Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A

scientific article

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.

scientific article published on 25 November 2015

Lentiviral-mediated gene transfer to the sheep brain: implications for gene therapy in Batten disease.

scientific article

MelanomaDB: A Web Tool for Integrative Analysis of Melanoma Genomic Information to Identify Disease-Associated Molecular Pathways

scientific article published on 16 July 2013

Microarray-based gene set analysis: a comparison of current methods

scientific article

Microarrays--analysis of signaling pathways

scientific article published in January 2008

Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements

scientific article

Multimodal Assessment of Estrogen Receptor mRNA Profiles to Quantify Estrogen Pathway Activity in Breast Tumors

scientific article

Multiple Gene Expression Classifiers from Different Array Platforms Predict Poor Prognosis of Colorectal Cancer

article

Mutations in genes encoding the cadherin receptor-ligand pair DCHS1 and FAT4 disrupt cerebral cortical development

scientific journal article

Non-invasive assessment of epidermal genomic markers of UV exposure in skin

scientific article published on 15 June 2020

Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples

scientific article published on April 2010

Paternal contribution to small for gestational age babies: a multicenter prospective study

scientific article

Predicting clinical outcome through molecular profiling in stage III melanoma

scientific article published in August 2008

Prediction of preeclampsia and delivery of small for gestational age babies based on a combination of clinical risk factors in high-risk women

scientific article

Prognostic roles for IL-2-producing and CD69 T cell subsets in colorectal cancer patients

scientific article published on 10 August 2018

Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China

scientific article published in 2013

Recurrent loss of heterozygosity correlates with clinical outcome in pancreatic neuroendocrine cancer

scientific article published on 20 July 2018

Reduced expression of a gene proliferation signature is associated with enhanced malignancy in colon cancer. ⬇️

scientific article published on September 2008

Role of transposable elements in heterochromatin and epigenetic control

scientific article (publication date: 22 July 2004)

SB Driver Analysis: a Sleeping Beauty cancer driver analysis framework for identifying and prioritizing experimentally actionable oncogenes and tumor suppressors

scientific article published on 01 September 2018

SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions.

scientific article published on 15 September 2016

Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species

scientific article

Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma

scientific article published on 15 March 2012

Slow proliferation as a biological feature of colorectal cancer metastasis.

scientific article published on 4 August 2009

Streptokinase antibodies in patients presenting with acute coronary syndrome in three rural New Zealand populations

scientific article published on 11 March 2011

Stress, novel sex genes and epigenetic reprogramming orchestrate socially-controlled sex change

article

Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change

scientific article published on 10 July 2019

Striatal mRNA expression patterns underlying peak dose L-DOPA-induced dyskinesia in the 6-OHDA hemiparkinsonian rat. ⬇️

scientific article published on 8 March 2016

Sugar-sweetened beverage consumption: a risk factor for prevalent gout with SLC2A9 genotype-specific effects on serum urate and risk of gout

scientific article

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software

scientific article published on 16 February 2022

T cell subpopulations in lymph nodes may not be predictive of patient outcome in colorectal cancer

scientific article

The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data

scientific article

The G protein-coupled receptor GPR30 inhibits proliferation of estrogen receptor-positive breast cancer cells.

scientific article

The Influence of Musculoskeletal Conditions, Behavioral Health Diagnoses, and Demographic Factors on Injury-Related Outcome in a High-Demand Population

scientific article

The chromosome 9p21.3 coronary heart disease risk allele is associated with altered gene expression in normal heart and vascular tissues

scientific article

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

scientific article published on 23 October 2015

The fibroblast growth factor-inducible 14 receptor is highly expressed in HER2-positive breast tumors and regulates breast cancer cell invasive capacity

scientific article

The power and promise of RNA-seq in ecology and evolution

scientific article

Transcriptomic analysis of the cardiac left ventricle in a rodent model of diabetic cardiomyopathy: molecular snapshot of a severe myocardial disease.

scientific article published on 24 October 2006

Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression

scientific article

Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression

scientific article published on 16 August 2021

Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression.

scientific article

Transposon mutagenesis identifies genetic drivers of Braf(V600E) melanoma

scientific article published on 13 April 2015

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

scientific article

Tumor mutational burden is a determinant of immune-mediated survival in breast cancer

scientific article published on 30 July 2018

Variable expression quantitative trait loci analysis of breast cancer risk variants

scientific article published in 2021

Weight bias and linguistic body representation in anorexia nervosa: Findings from the BodyTalk project

scientific article published on 30 November 2020

YB-1, the E2F pathway, and regulation of tumor cell growth

scientific article published on 28 December 2011

graphsim: An R package for simulating gene expression data from graph structures of biological pathways

scientific article published on 09 July 2020

∆133p53 isoform promotes tumour invasion and metastasis via interleukin-6 activation of JAK-STAT and RhoA-ROCK signalling

scientific article published on 17 January 2018

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