List of works - Joana Abrantes

A shared unusual genetic change at the chemokine receptor type 5 between Oryctolagus, Bunolagus and Pentalagus

article by Joana Abrantes et al published 11 October 2009 in Conservation Genetics

Adaptive Gene Loss? Tracing Back the Pseudogenization of the Rabbit CCL8 Chemokine

scientific article published on 15 June 2016

Adenovirus emergence in a red squirrel (Sciurus vulgaris) in Iberian Peninsula

scientific article published on 17 May 2020

An evolutionary perspective of mammal salivary peptide families: cystatins, histatins, statherin and PRPs

scientific article published on 24 January 2013

An overview of the lagomorph immune system and its genetic diversity

scientific article published on 23 September 2015

An update on the rabbit hemorrhagic disease virus (RHDV) strains circulating in Portugal in the 1990s: earliest detection of G3-G5 and G6.

scientific article

Analysis of substitution rates showed that TLR5 is evolving at different rates among mammalian groups

scientific article published on 02 December 2019

Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group

scientific article published on 19 October 2017

Characterization of thymosin β4 in mammals’ saliva

scientific article published on 20 December 2012

Complete coding sequences of European brown hare syndrome virus (EBHSV) strains isolated in 1982 in Sweden

scientific article published on 3 May 2013

Complete genome sequence of two rabbit hemorrhagic disease virus variant b isolates detected on the Iberian Peninsula

scientific article published on 11 January 2015

Complete genomic sequences of rabbit hemorrhagic disease virus G1 strains isolated in the European rabbit original range

scientific article published on December 2012

Convergent evolution of IL-6 in two leporids (Oryctolagus and Pentalagus) originated an extended protein.

scientific article published on 16 July 2014

Cross-species comparison of mammalian saliva using an LC-MALDI based proteomic approach

scientific article published on 9 March 2015

Detection of RHDV strains in the Iberian hare (Lepus granatensis): earliest evidence of rabbit lagovirus cross-species infection.

scientific article

Detection of RHDVa on the Iberian Peninsula: isolation of an RHDVa strain from a Spanish rabbitry

scientific article published on 13 August 2013

Detection of positive selection in the major capsid protein VP60 of the rabbit haemorrhagic disease virus (RHDV).

scientific article

Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs

scientific article published on 31 October 2016

Diversity and evolutionary history of the MHC DQA gene in leporids

article

Emergence of Pathogenicity in Lagoviruses: Evolution from Pre-existing Nonpathogenic Strains or through a Species Jump?

scientific article

Epidemiology of RHDV2 (Lagovirus europaeus/GI.2) in free-living wild European rabbits in Portugal

scientific article

Evidence for recombination in the major capsid gene VP60 of the rabbit haemorrhagic disease virus (RHDV).

scientific article

Evolution of C, D and S-type cystatins in mammals: an extensive gene duplication in primates

scientific article

Evolution of CCL11: genetic characterization in lagomorphs and evidence of positive and purifying selection in mammals

scientific article

Evolution of CCL16 in Glires (Rodentia and Lagomorpha) shows an unusual random pseudogenization pattern

scientific article published on 20 February 2019

Evolution of rabbit haemorrhagic disease virus (RHDV) in the European rabbit (Oryctolagus cuniculus) from the Iberian Peninsula.

scientific article published on 21 September 2008

Evolutionary Insights into IL17A in Lagomorphs

scientific article

Evolutionary studies on the betaretrovirus RERV-H in the Leporidae family reveal an endogenization in the ancestor of Oryctolagus, Bunolagus and Pentalagus at 9 million years ago.

scientific article

Evolutionary study of leporid CD4 reveals a hotspot of genetic variability within the D2 domain

scientific article

Extensive gene conversion between CCR2 and CCR5 in domestic cat (Felis catus)

article

Field and experimental data indicate that the eastern cottontail (Sylvilagus floridanus) is susceptible to infection with European brown hare syndrome (EBHS) virus and not with rabbit haemorrhagic disease (RHD) virus.

scientific article

Full genome sequences are key to disclose RHDV2 emergence in the Macaronesian islands

scientific article published on 18 November 2017

Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events

scientific article published on 27 January 2015

Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs.

scientific article published on 21 September 2015

Genetic characterization of the chemokine receptor CXCR4 gene in lagomorphs: comparison between the families Ochotonidae and Leporidae

article

Genetic diversity comparison of the DQA gene in European rabbit (Oryctolagus cuniculus) populations

scientific article published on 26 August 2015

Hepatitis E virus is likely circulating in wild rabbits from Iberian Peninsula

scientific article published on 29 June 2020

Histo-blood group antigens act as attachment factors of rabbit hemorrhagic disease virus infection in a virus strain-dependent manner

scientific article

Host specific glycans are correlated with susceptibility to infection by lagoviruses, but not with their virulence.

scientific article published on 29 November 2017

Insights into the European rabbit (Oryctolagus cuniculus) innate immune system: genetic diversity of the toll-like receptor 3 (TLR3) in wild populations and domestic breeds

scientific article published on 21 August 2013

Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI.2) and the identification of novel recombinant strains.

scientific article published on 11 February 2018

Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations?

scientific article

Leporid immunoglobulin G shows evidence of strong selective pressure on the hinge and CH3 domains

scientific article

Maximum-likelihood approaches reveal signatures of positive selection in IL genes in mammals

scientific article published on 17 June 2013

Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many

scientific article

Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).

scientific article

Neofunctionalization of the Sec1 α1,2fucosyltransferase paralogue in leporids contributes to glycan polymorphism and resistance to rabbit hemorrhagic disease virus

scientific article

New variant of rabbit hemorrhagic disease virus, Portugal, 2012-2013.

scientific article published on November 2013

Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes

scientific article (publication date: 6 November 2013)

Not-So-Novel Michigan Rabbit Calicivirus1 ⬇️

scientific article published on August 1, 2010

Overcoming species barriers: an outbreak of Lagovirus europaeus GI.2/RHDV2 in an isolated population of mountain hares (Lepus timidus)

scientific article published on 26 November 2018

Partial sequencing of recent Portuguese myxoma virus field isolates exhibits a high degree of genetic stability.

scientific article published on 8 August 2009

Proceedings of the Frontiers of Retrovirology Conference 2016.

scientific article published on 26 September 2016

Proposal for a unified classification system and nomenclature of lagoviruses

scientific article

Pseudogenization of CCL14 in the Ochotonidae (pika) family

scientific article published on 26 March 2015

Pseudogenization of the MCP-2/CCL8 chemokine gene in European rabbit (genus Oryctolagus), but not in species of Cottontail rabbit (Sylvilagus) and Hare (Lepus).

scientific article

Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic disease virus (RHDV): a review

scientific article (publication date: 10 February 2012)

Rabbit hemorrhagic disease virus detected in Pico, Azores, Portugal, revealed a unique endemic strain with more than 17 years of independent evolution

scientific article

Recombination between G2 and G6 strains of rabbit hemorrhagic disease virus (RHDV) in China

scientific article

Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids

scientific article published on 30 September 2014

Sharing of endogenous lentiviral gene fragments among leporid lineages separated for more than 12 million years

scientific article (publication date: March 2009)

Signatures of positive selection in Toll-like receptor (TLR) genes in mammals

scientific article

Spread of new variant RHDV in domestic rabbits on the Iberian Peninsula

scientific article published on 31 December 2013

Strong selection of the TLR2 coding region among the Lagomorpha suggests an evolutionary history that differs from other mammals

scientific article published on 14 March 2019

TCTEX1D4, a novel protein phosphatase 1 interactor: connecting the phosphatase to the microtubule network

scientific article

The antiviral activity of rodent and lagomorph SERINC3 and SERINC5 is counteracted by known viral antagonists

scientific article published on 19 December 2018

The evolutionary history of the allopolyploid Squalius alburnoides (Cyprinidae) complex in the northern Iberian Peninsula

scientific article

The wide utility of rabbits as models of human diseases.

scientific article published on 22 May 2018

Tracking the evolution of the G1/RHDVb recombinant strains introduced from the Iberian Peninsula to the Azores islands, Portugal.

scientific article published on 9 July 2015

Trichomonas Infection in a Community of Free-Ranging Domestic and Wild Columbiformes and Bonelli's Eagle (Aquila fasciata).

scientific article

Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals

scientific article published on 16 June 2009

Worldwide rapid spread of the novel rabbit haemorrhagic disease virus (GI.2/RHDV2/b)

scientific article published on 17 April 2019

List of works by Joana Abrantes

A shared unusual genetic change at the chemokine receptor type 5 between Oryctolagus, Bunolagus and Pentalagus

Adaptive Gene Loss? Tracing Back the Pseudogenization of the Rabbit CCL8 Chemokine

Adenovirus emergence in a red squirrel (Sciurus vulgaris) in Iberian Peninsula

An evolutionary perspective of mammal salivary peptide families: cystatins, histatins, statherin and PRPs

An overview of the lagomorph immune system and its genetic diversity

An update on the rabbit hemorrhagic disease virus (RHDV) strains circulating in Portugal in the 1990s: earliest detection of G3-G5 and G6.

Analysis of substitution rates showed that TLR5 is evolving at different rates among mammalian groups

Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group

Characterization of thymosin β4 in mammals’ saliva

Complete coding sequences of European brown hare syndrome virus (EBHSV) strains isolated in 1982 in Sweden

Complete genome sequence of two rabbit hemorrhagic disease virus variant b isolates detected on the Iberian Peninsula

Complete genomic sequences of rabbit hemorrhagic disease virus G1 strains isolated in the European rabbit original range

Convergent evolution of IL-6 in two leporids (Oryctolagus and Pentalagus) originated an extended protein.

Cross-species comparison of mammalian saliva using an LC-MALDI based proteomic approach

Detection of RHDV strains in the Iberian hare (Lepus granatensis): earliest evidence of rabbit lagovirus cross-species infection.

Detection of RHDVa on the Iberian Peninsula: isolation of an RHDVa strain from a Spanish rabbitry

Detection of positive selection in the major capsid protein VP60 of the rabbit haemorrhagic disease virus (RHDV).

Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs

Diversity and evolutionary history of the MHC DQA gene in leporids

Emergence of Pathogenicity in Lagoviruses: Evolution from Pre-existing Nonpathogenic Strains or through a Species Jump?

Epidemiology of RHDV2 (Lagovirus europaeus/GI.2) in free-living wild European rabbits in Portugal

Evidence for recombination in the major capsid gene VP60 of the rabbit haemorrhagic disease virus (RHDV).

Evolution of C, D and S-type cystatins in mammals: an extensive gene duplication in primates

Evolution of CCL11: genetic characterization in lagomorphs and evidence of positive and purifying selection in mammals

Evolution of CCL16 in Glires (Rodentia and Lagomorpha) shows an unusual random pseudogenization pattern

Evolution of rabbit haemorrhagic disease virus (RHDV) in the European rabbit (Oryctolagus cuniculus) from the Iberian Peninsula.

Evolutionary Insights into IL17A in Lagomorphs

Evolutionary studies on the betaretrovirus RERV-H in the Leporidae family reveal an endogenization in the ancestor of Oryctolagus, Bunolagus and Pentalagus at 9 million years ago.

Evolutionary study of leporid CD4 reveals a hotspot of genetic variability within the D2 domain

Extensive gene conversion between CCR2 and CCR5 in domestic cat (Felis catus)

Field and experimental data indicate that the eastern cottontail (Sylvilagus floridanus) is susceptible to infection with European brown hare syndrome (EBHS) virus and not with rabbit haemorrhagic disease (RHD) virus.

Full genome sequences are key to disclose RHDV2 emergence in the Macaronesian islands

Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events

Genetic characterization of interleukins (IL-1α, IL-1β, IL-2, IL-4, IL-8, IL-10, IL-12A, IL-12B, IL-15 and IL-18) with relevant biological roles in lagomorphs.

Genetic characterization of the chemokine receptor CXCR4 gene in lagomorphs: comparison between the families Ochotonidae and Leporidae

Genetic diversity comparison of the DQA gene in European rabbit (Oryctolagus cuniculus) populations

Hepatitis E virus is likely circulating in wild rabbits from Iberian Peninsula

Histo-blood group antigens act as attachment factors of rabbit hemorrhagic disease virus infection in a virus strain-dependent manner

Host specific glycans are correlated with susceptibility to infection by lagoviruses, but not with their virulence.

Insights into the European rabbit (Oryctolagus cuniculus) innate immune system: genetic diversity of the toll-like receptor 3 (TLR3) in wild populations and domestic breeds

Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI.2) and the identification of novel recombinant strains.

Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations?

Leporid immunoglobulin G shows evidence of strong selective pressure on the hinge and CH3 domains

Maximum-likelihood approaches reveal signatures of positive selection in IL genes in mammals

Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many

Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).

Neofunctionalization of the Sec1 α1,2fucosyltransferase paralogue in leporids contributes to glycan polymorphism and resistance to rabbit hemorrhagic disease virus

New variant of rabbit hemorrhagic disease virus, Portugal, 2012-2013.

Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes

Not-So-Novel Michigan Rabbit Calicivirus1 ⬇️

Overcoming species barriers: an outbreak of Lagovirus europaeus GI.2/RHDV2 in an isolated population of mountain hares (Lepus timidus)

Partial sequencing of recent Portuguese myxoma virus field isolates exhibits a high degree of genetic stability.

Proceedings of the Frontiers of Retrovirology Conference 2016.

Proposal for a unified classification system and nomenclature of lagoviruses

Pseudogenization of CCL14 in the Ochotonidae (pika) family

Pseudogenization of the MCP-2/CCL8 chemokine gene in European rabbit (genus Oryctolagus), but not in species of Cottontail rabbit (Sylvilagus) and Hare (Lepus).

Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic disease virus (RHDV): a review

Rabbit hemorrhagic disease virus detected in Pico, Azores, Portugal, revealed a unique endemic strain with more than 17 years of independent evolution

Recombination between G2 and G6 strains of rabbit hemorrhagic disease virus (RHDV) in China

Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids

Sharing of endogenous lentiviral gene fragments among leporid lineages separated for more than 12 million years

Signatures of positive selection in Toll-like receptor (TLR) genes in mammals

Spread of new variant RHDV in domestic rabbits on the Iberian Peninsula

Strong selection of the TLR2 coding region among the Lagomorpha suggests an evolutionary history that differs from other mammals

TCTEX1D4, a novel protein phosphatase 1 interactor: connecting the phosphatase to the microtubule network

The antiviral activity of rodent and lagomorph SERINC3 and SERINC5 is counteracted by known viral antagonists

The evolutionary history of the allopolyploid Squalius alburnoides (Cyprinidae) complex in the northern Iberian Peninsula

The wide utility of rabbits as models of human diseases.

Tracking the evolution of the G1/RHDVb recombinant strains introduced from the Iberian Peninsula to the Azores islands, Portugal.

Trichomonas Infection in a Community of Free-Ranging Domestic and Wild Columbiformes and Bonelli's Eagle (Aquila fasciata).

Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals

Worldwide rapid spread of the novel rabbit haemorrhagic disease virus (GI.2/RHDV2/b)