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List of works by Joy D. Van Nostrand

1169 Travelers' Diarrhea, Single Dose Antibiotics, Acquisition of Multi-Drug Resistance and Associations With Functional Microbiome Characterization: Is There Any There There? ⬇️

scholarly article

A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.

scientific article published on 2 April 2015

A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom

scientific article published on 05 October 2016

Adaptive Evolution of Sphingobium hydrophobicum C1T in Electronic Waste Contaminated River Sediment

scientific article published on 02 October 2019

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling.

scientific article

Anaerobic Disposal of Arsenic-Bearing Wastes Results in Low Microbially Mediated Arsenic Volatilization

scientific article published on 7 October 2016

Analysis of the functional gene structure and metabolic potential of microbial community in high arsenic groundwater

scientific article published on 21 June 2017

Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming

scientific article

Anti-listeria Activities of Linalool and Its Mechanism Revealed by Comparative Transcriptome Analysis

scientific article published on 20 December 2019

Applications of functional gene microarrays for profiling microbial communities

scientific article published on 04 January 2012

Artificial reforestation produces less diverse soil nitrogen‐cycling genes than natural restoration

scientific article published on 25 January 2019

Assessing the microbial community and functional genes in a vertical soil profile with long-term arsenic contamination

scientific article

Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis

scientific article

Author Correction: Continental scale structuring of forest and soil diversity via functional traits

scientific article published on 01 November 2019

Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 01 December 2019

Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations

scientific article

Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis

scientific article published in 2015

Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism

scientific article published on 20 April 2016

Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants

scientific article published on 06 November 2019

Biogeochemical processes controlling authigenic carbonate formation within the sediment column from the Okinawa Trough

scientific article published in 2018

Biogeographic patterns of soil diazotrophic communities across six forests in the North America.

scientific article

Biogeography and Assembly of Microbial Communities in Wastewater Treatment Plants in China

scientific article published on 07 April 2020

Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles.

scientific article

Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments

scientific article published on 31 August 2020

Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum

scientific article

Cas9-based tools for targeted genome editing and transcriptional control.

scientific article published on 03 January 2014

Changes in protein expression in Burkholderia vietnamiensis PR1 301 at pH 5 and 7 with and without nickel

scientific article

Climate warming accelerates temporal scaling of grassland soil microbial biodiversity

scientific article published on 25 March 2019

Climate warming leads to divergent succession of grassland microbial communities

scholarly article

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

scientific article published on 31 October 2015

Continental scale structuring of forest and soil diversity via functional traits

scientific article published on 19 August 2019

Contradictory effects of silver nanoparticles on activated sludge wastewater treatment

scientific article

Correction to GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer

scientific article published on 5 February 2013

Correction: Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations

scientific article published on 7 December 2017

Correction: Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill

scientific article published on 9 November 2012

Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields

scientific article (publication date: November 2011)

Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'

scientific article

Deep-sea oil plume enriches indigenous oil-degrading bacteria

scientific article

Design and analysis of mismatch probes for long oligonucleotide microarrays

scientific article

Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities

article

Development of HuMiChip for functional profiling of human microbiomes

scientific article

Differential Sensitivity of Wetland-Derived Nitrogen Cycling Microorganisms to Copper Nanoparticles

scientific article published on 01 September 2018

Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem

scientific article (publication date: March 2014)

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

scientific article published on 27 October 2017

Divergent taxonomic and functional responses of microbial communities to field simulation of aeolian soil erosion and deposition.

scientific article

Diverse metabolic and stress-tolerance pathways in chasmoendolithic and soil communities of Miers Valley, McMurdo Dry Valleys, Antarctica

scientific article

Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing

scientific article published on 18 October 2017

Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain

scientific article

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

scientific article published on 10 April 2015

Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.

scientific article

Dynamics of Microbial Community Composition and Function duringIn SituBioremediation of a Uranium-Contaminated Aquifer

article

Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer

scientific article

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.

scientific article published on 7 May 2018

Effect of pH on the toxicity of nickel and other divalent metals to Burkholderia cepacia PR1(301).

scientific article published in November 2005

Effects of Nitrate Exposure on the Functional Structure of a Microbial Community in a Uranium-contaminated Aquifer

scholarly article published 17 May 2010

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface

scientific article

Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase

scientific article published on 24 April 2015

Elevated CO and Warming Altered Grassland Microbial Communities in Soil Top-Layers

article

Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem.

scientific article

Elevated CO₂ influences microbial carbon and nitrogen cycling

scientific article (publication date: 29 May 2013)

Elevated carbon dioxide alters the structure of soil microbial communities

scientific article

Elucidation of the methanogenic potential from coalbed microbial communities amended with volatile fatty acids

scientific article published on 01 April 2017

Environmental antibiotics drives the genetic functions of resistome dynamics

scientific article published on 17 December 2019

Environmental filtering decreases with fish development for the assembly of gut microbiota

scientific article

Environmental stress mediates groundwater microbial community assembly

scholarly article published on 11 January 2024

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.

scientific article

Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris

scientific article published on 15 September 2020

Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin

scientific article published on 11 January 2012

First investigation of the microbiology of the deepest layer of ocean crust

scientific article published in 2010

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization

scientific article published on 13 August 2015

Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels

article

Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities.

scientific article published on 18 June 2019

Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment

scientific article

Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand

article

Functional biogeography as evidence of gene transfer in hypersaline microbial communities

scientific article

Functional capabilities of bacterial biofilms on gold particles

scientific article published on 01 January 2020

Functional ecology of an Antarctic Dry Valley

scientific article (publication date: 28 May 2013)

Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments

article

Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis.

scientific article

Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands

scientific article

Functional gene diversity of oolitic sands from Great Bahama Bank.

scientific article

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

scientific article

Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest

scientific article published on 06 April 2020

Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming

scientific article published on 29 September 2020

Genetic linkage of soil carbon pools and microbial functions in subtropical freshwater wetlands in response to experimental warming

scientific article

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

scientific article

GeoChip 3.0: A High Throughput Tool for Analyzing Microbial Community, Composition, Structure, and Functional Activity

article

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis

scientific article

GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping.

scientific article

GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer

scientific article published on 23 May 2012

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer

scientific article published on 14 July 2009

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

scientific article

GeoChip-based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage.

scientific article

GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

scientific article published on 8 November 2012

Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes

scientific article

Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 13 May 2019

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities

scientific article

High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer

scientific article published on 26 July 2019

How sulphate-reducing microorganisms cope with stress: lessons from systems biology

scientific article

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere.

scientific article

Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip

scientific article published on January 2016

Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China.

scientific article

Impacts of the Three Gorges Dam on microbial structure and potential function

scientific article

In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen

scientific article published in August 2007

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations

scientific article published on 28 September 2020

Integrated metagenomics and network analysis of soil microbial community of the forest timberline.

scientific article

Interconnection of Key Microbial Functional Genes for Enhanced Benzo[a]pyrene Biodegradation in Sediments by Microbial Electrochemistry.

scientific article

Isolation and characterization of four gram-positive nickel-tolerant microorganisms from contaminated sediments

scientific article published on 03 April 2007

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

scientific article

Long-Term Effects of Soil Remediation with Willow Short Rotation Coppice on Biogeographic Pattern of Microbial Functional Genes

scientific article published on 12 January 2022

Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils

article

Long-term cultivation of a stable Methylocystis-dominated methanotrophic enrichment enabling tailored production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate).

scientific article published on 3 October 2015

Management with willow short rotation coppice increase the functional gene diversity and functional activity of a heavy metal polluted soil.

scientific article

Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu.

scientific article published on 29 March 2014

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

scientific article published on 23 March 2010

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

scientific article published on 28 August 2009

Microarray-based evaluation of whole-community genome DNA amplification methods

scientific article

Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil.

scientific article

Microbial Community Dynamics and Activity Link to Indigo Production from Indole in Bioaugmented Activated Sludge Systems

scientific article published on 15 September 2015

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

scientific article published on 19 September 2017

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

scientific article published on 20 February 2018

Microbial Functional Responses Explain Alpine Soil Carbon Fluxes under Future Climate Scenarios

scientific article published in 2021

Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring

scientific article published on 29 April 2016

Microbial communities and functional genes associated with soil arsenic contamination and the rhizosphere of the arsenic-hyperaccumulating plant Pteris vittata L

scientific article

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

scientific article

Microbial community changes during sustained Cr(VI) reduction at the 100H site in Hanford, WA

Microbial community structure and function of nitrobenzene reduction biocathode in response to carbon source switchover

scientific article published on 5 February 2014

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

scientific article published on 01 April 2018

Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil

scientific article

Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction

scientific article

Microbial functional genes commonly respond to elevated carbon dioxide

scientific article published on 29 August 2020

Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

scientific article published on 02 December 2009

Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing

scientific article published on 30 January 2019

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

scientific article

Microscale heterogeneity of the soil nitrogen cycling microbial functional structure and potential metabolism

scientific article published on 07 December 2020

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China).

scientific article

Ocean Acidification Regulates the Activity, Community Structure, and Functional Potential of Heterotrophic Bacterioplankton in an Oligotrophic Gyre

scientific article published in 2019

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

scientific article published on 7 April 2015

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

scientific article published on 19 June 2015

Phylogenetic and functional diversity of microbial communities associated with subsurface sediments of the Sonora Margin, Guaymas Basin.

scientific article

Phytomanagement Reduces Metal Availability and Microbial Metal Resistance in a Metal Contaminated Soil

scientific article published on 07 August 2020

Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus

scientific article

Production of Nitrous Oxide from Nitrite in Stable Type II Methanotrophic Enrichments.

scientific article published on 24 August 2015

Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

scientific article

Rare prokaryotic sub-communities dominate the complexity of ecological networks and soil multinutrient cycling during long-term secondary succession in China's Loess Plateau

scientific article published on 09 February 2021

Reduction of nickel and uranium toxicity and enhanced trichloroethylene degradation to Burkholderia vietnamiensis PR1301 with hydroxyapatite amendment

scientific article published in March 2007

Reproducibility and quantitation of amplicon sequencing-based detection

scientific article

Responses of microbial communities to single-walled carbon nanotubes in phenol wastewater treatment systems

scientific article published on 13 March 2015

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation

scientific article published on 18 March 2010

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

scientific article published on 27 November 2012

Saliva microbiota carry caries-specific functional gene signatures

scientific article

Salivary mycobiome dysbiosis and its potential impact on bacteriome shifts and host immunity in oral lichen planus

scientific article published on 02 July 2019

Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands.

scientific article published on 29 October 2015

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

scientific article

Soil aggregate size mediates the impacts of cropping regimes on soil carbon and microbial communities

article

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests.

scientific article published on 12 September 2015

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community

scientific article

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

scientific article

StressChip as a high-throughput tool for assessing microbial community responses to environmental stresses

scientific article

Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts.

scientific article published on 20 September 2017

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica

scientific article published on 20 October 2016

Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass

scientific article

Taxonomic and functional responses of soil microbial communities to slag-based fertilizer amendment in rice cropping systems

scientific article published on 11 April 2019

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

scientific article published on 29 August 2017

Temperature mediates continental-scale diversity of microbes in forest soils.

scientific article

Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils

scientific article published on 02 June 2021

The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities

scientific article published on 13 June 2013

The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea

scientific article

The effects of silver nanoparticles on intact wastewater biofilms

scientific article published on 6 July 2015

The functional gene composition and metabolic potential of coral-associated microbial communities

scientific article

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

scientific article

The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill

scientific article

Use of functional gene arrays for elucidating in situ biodegradation.

scientific article

Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning

scientific article

Warming enhances old organic carbon decomposition through altering functional microbial communities

scientific article

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community

scientific article published on 17 January 2020

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