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List of works by Matthias Futschik

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Tight regulation of unstructured proteins: from transcript synthesis to protein degradation

scientific article
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

scientific article
Noise-robust soft clustering of gene expression time-course data

scientific article
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

scientific article
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

scientific article
UniHI: an entry gate to the human protein interactome

scientific article
Comparison of human protein-protein interaction maps.

scientific article
Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions

scientific article
Association of CDH1 haplotypes with susceptibility to sporadic diffuse gastric cancer

scientific article published in November 2002
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus.

scientific article published on 19 May 2010
UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks

scientific article
Transcriptome dynamics of a broad host-range cyanophage and its hosts.

scientific article
Iron deprivation in Synechocystis: inference of pathways, non-coding RNAs, and regulatory elements from comprehensive expression profiling

scientific article published on December 2012
OLIN: optimized normalization, visualization and quality testing of two-channel microarray data

scientific article
UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome

scientific article published on 4 November 2008
Genome-wide analysis of light sensing in Prochlorococcus

scientific article published on 15 September 2006
CyanoEXpress: A web database for exploration and visualisation of the integrated transcriptome of cyanobacterium Synechocystis sp. PCC6803.

scientific article published on 6 July 2012
Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis

scientific article published on 29 February 2008
Identification of Sc-type ILV6 as a target to reduce diacetyl formation in lager brewers' yeast

scientific article published on 3 August 2011
Huntington's disease and its therapeutic target genes: a global functional profile based on the HD Research Crossroads database

scientific article
Comparison and consolidation of microarray data sets of human tissue expression

scientific article
A novel phosphatidylinositol 3-kinase (PI3K) inhibitor directs a potent FOXO-dependent, p53-independent cell cycle arrest phenotype characterized by the differential induction of a subset of FOXO-regulated genes

scientific article
StemChecker: a web-based tool to discover and explore stemness signatures in gene sets.

scientific article
Acclimation of Oxygenic Photosynthesis to Iron Starvation Is Controlled by the sRNA IsaR1.

scientific article
Model selection and efficiency testing for normalization of cDNA microarray data

scientific article
The unfolded protein response and its potential role in Huntington's disease elucidated by a systems biology approach.

scientific article published on May 2015
The Transcriptional Landscape of the Photosynthetic Model Cyanobacterium Synechocystis sp. PCC6803.

scientific article published on 29 February 2016
Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

scientific article
Targeting molecular networks for drug research

scientific article
Novel Human Embryonic Stem Cell Regulators Identified by Conserved and Distinct CpG Island Methylation State

scientific article published on 7 July 2015
TRIB2 as a biomarker for diagnosis and progression of melanoma

scientific article published on 13 January 2015
Interleukin 32 promotes hematopoietic progenitor expansion and attenuates bone marrow cytotoxicity

scientific article published on 13 May 2011
DNA motifs and sequence periodicities.

scientific article published in January 2006
StemMapper: a curated gene expression database for stem cell lineage analysis.

scientific article published on 17 October 2017
Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

scientific article published on May 2015
Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue

scientific article
StemCellNet: an interactive platform for network-oriented investigations in stem cell biology.

scientific article published on 22 May 2014
Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 3 October 2017
Prediction of clinical behaviour and treatment for cancers.

scientific article published in January 2003
Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism

scientific article published on 26 December 2018
Extracellular Proteins: Novel Key Components of Metal Resistance in Cyanobacteria?

scientific article published on 07 June 2016
HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington's Disease.

scientific article published on 12 July 2017
Differentially expressed microRNAs in maternal plasma for the noninvasive prenatal diagnosis of Down syndrome (trisomy 21).

scientific article
Inferring modules from human protein interactome classes

scientific article
Systematic functional assessment of human protein-protein interaction maps.

scientific article published on January 2006
Transcriptional profiling of the hematopoietic support of interleukin-stimulated human umbilical vein endothelial cells (HUVECs).

scientific article published on 7 June 2011
Correction: The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

scientific article published on 8 November 2008
ChIP-seq Experiment and Data Analysis in the Cyanobacterium <i>Synechocystis</i> sp. PCC 6803

publication published on 20 June 2018
Graph-theoretical comparison reveals structural divergence of human protein interaction networks

scientific article published on 01 January 2007
Parallel Genome-wide Profiling of Coding and Non-coding RNAs to Identify Novel Regulatory Elements in Embryonic and Maturated Heart.

scientific article

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