Search filters

List of works by Shigeyuki Yokoyama

(1)H, (13)C, and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A.

scientific article

13-Deoxytedanolide, a marine sponge-derived antitumor macrolide, binds to the 60S large ribosomal subunit

scientific article published in January 2005

13C-NMR studies on tertiary structures of E. coli tRNAs with 13C-labeling method

scientific article published on 01 January 1980

1H NMR studies on the conformational characteristics of 2-thiopyrimidine nucleotides found in transfer RNAs ⬇️

scientific article published on June 11, 1979

1H, 13C and 15N resonance assignments of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus

scientific article published in January 2006

A 15N-1H nuclear magnetic resonance study on the interaction between isoleucine tRNA and isoleucyl-tRNA synthetase from Escherichia coli.

scientific article

A B-box 2 surface patch important for TRIM5alpha self-association, capsid binding avidity, and retrovirus restriction

scientific article published on 05 August 2009

A Rac GTPase-activating protein, MgcRacGAP, is a nuclear localizing signal-containing nuclear chaperone in the activation of STAT transcription factors

scientific article published on 21 January 2009

A SelB/EF-Tu/aIF2γ-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).

scientific article

A TAF4-homology domain from the corepressor ETO is a docking platform for positive and negative regulators of transcription

scientific article

A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation

scientific article published on 20 November 2017

A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal

scientific article

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

scientific article

A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling

scientific article

A constitutive effector region on the C-terminal side of switch I of the Ras protein

scientific article published on 01 March 1995

A delicate interplay of structure, dynamics, and thermodynamics for function: a high pressure NMR study of outer surface protein A.

scientific article published on 21 February 2012

A fluorescence correlation spectroscopy-based assay for fragment screening of slowly inhibiting protein–peptide interaction inhibitors

scientific article published in 2010

A fluorescent-based high-throughput screening assay for small molecules that inhibit the interaction of MdmX with p53.

scientific article

A glutamic acid residue at position 31 of Ras protein is essential to the signal transduction for neurite outgrowth of PC12 cells and the stimulation of GTPase activity by GAPRas

scientific article published on March 1, 1992

A helix-turn-helix structure unit in human centromere protein B (CENP-B).

scientific article

A highly efficient cell-free protein synthesis system from Escherichia coli

scientific article published on 01 August 1996

A human cell-derived in vitro coupled transcription/translation system optimized for production of recombinant proteins

scientific article published on 11 September 2008

A hybridoma-based in vitro translation system that efficiently synthesizes glycoproteins

A modified uridine in the first position of the anticodon of a minor species of arginine tRNA, the argU gene product, from Escherichia coli.

scientific article

A new manual dispensing system for in meso membrane protein crystallization with using a stepping motor-based dispenser

scientific article published on 24 July 2014

A new method for induced fit docking (GENIUS) and its application to virtual screening of novel HCV NS3-4A protease inhibitors

scientific article published on 16 September 2011

A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe

scientific article published in October 2006

A new unnatural base pair system between fluorophore and quencher base analogues for nucleic acid-based imaging technology

scientific article published on November 2010

A novel Pim-1 kinase inhibitor targeting residues that bind the substrate peptide

scientific article

A novel conformation of RNA polymerase sheds light on the mechanism of transcription ⬇️

scientific article published on July 1, 2011

A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site

scientific article

A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI.

scientific article published on September 2005

A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli

A novel metal-activated L-serine O-acetyltransferase from Thermus thermophilus HB8.

scientific article published in November 2004

A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors

scientific article

A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P

scientific article

A pyrrolo-pyrimidine derivative targets human primary AML stem cells in vivo

scientific article

A quantitative, non-radioactive single-nucleotide insertion assay for analysis of DNA replication fidelity by using an automated DNA sequencer.

scientific article published in June 2004

A redox switch shapes the Lon protease exit pore to facultatively regulate proteolysis

article published in 2014

A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis

scientific article published on December 2007

A series of bacterial co-expression vectors with rare-cutter recognition sequences

scientific article

A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase

scientific article

A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system

scientific article published on 01 March 1999

A site-directed mutagenesis study on the role of isoleucine-23 of human epidermal growth factor in the receptor binding

scientific article published on 01 April 1992

A small-molecule AdipoR agonist for type 2 diabetes and short life in obesity

scientific article

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction

scientific article

A solid-state 17O NMR, X-ray, and quantum chemical study of N-α-Fmoc-protected amino acids

scientific article (publication date: October 2008)

A structure-based strategy for discovery of small ligands binding to functionally unknown proteins: combination of in silico screening and surface plasmon resonance measurements

scientific article

A tandem insertion vector for large-scale preparation of nucleosomal DNA

scientific article published in 2012

A three-dimensional structure model of the complex of glutamyl-tRNA synthetase and its cognate tRNA.

scientific article

A two-unnatural-base-pair system toward the expansion of the genetic code

scientific article published in October 2004

A unique fluorescent base analogue for the expansion of the genetic alphabet

scientific article published in April 2010

A1H-15N NM R study of human c-Ha-ras protein: Biosynthetic incorporation of15N-labeled amino acids

scientific article published on 01 January 1992

ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding

scientific article

ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.

scientific article published in January 2005

AU-rich RNA-binding induces changes in the quaternary structure of AUH

scientific article

Aberrant assembly of RNA recognition motif 1 links to pathogenic conversion of TAR DNA-binding protein of 43 kDa (TDP-43)

scientific article published on 4 April 2013

Activation of Ras and its downstream extracellular signal-regulated protein kinases by the CDC25 homology domain of mouse Son-of-sevenless 1 (mSos1).

scientific article published in May 1998

Activation of the Pyrrolysine Suppressor tRNA Requires Formation of a Ternary Complex with Class I and Class II Lysyl-tRNA Synthetases ⬇️

scientific article published on August 1, 2003

Adaptability of nonnatural aromatic amino acids to the active center of the E. coli ribosomal A site

scientific article published on 01 November 1993

Adaptation of intronic homing endonuclease for successful horizontal transmission

scientific article

Adding l-lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases

scientific article published on 8 May 2008

Advanced nuclear magnetic resonance lanthanide probe analyses of short-range conformational interrelations controlling ribonucleic acid structures.

scientific article published in May 1981

Allosteric effect of fructose 1,6-bisphosphate on the conformation of NAD+ as bound to L-lactate dehydrogenase from Thermus caldophilus GK24

article by Machida M et al published 1 December 1985 in Journal of Biological Chemistry

Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator

scientific article

Alteration of enzymatic properties of cell-surface antigen CD38 by agonistic anti-CD38 antibodies that prolong B cell survival and induce activation

scientific article published on November 2007

Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme ⬇️

scientific article (publication date: 2 May 2003)

Aminoacyl-tRNA exclusively in the 3'-isomeric form is bound to polypeptide chain elongation factor Tu.

scientific article published on December 1985

Aminoacyl-tRNA synthetases from an extreme thermophile, Thermus thermophilus HB8

scientific article published on 01 January 1983

Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition

An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure

scientific article published on 20 March 2006

An NMR study on the interaction of Escherichia coli DinI with RecA-ssDNA complexes

scientific article

An RNA aptamer to the xanthine/guanine base with a distinctive mode of purine recognition ⬇️

scientific article published on April 1, 1998

An RNA fragment consisting of the P7 and P9.0 stems and the 3'-terminal guanosine of the Tetrahymena group I intron.

scientific article published on April 1996

An antibiotic-binding motif of an RNA fragment derived from the A-site-related region of Escherichia coli 16S rRNA.

scientific article published on October 1996

An approach to global fold determination using limited NMR data from larger proteins selectively protonated at specific residue types.

scientific article

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

scientific article

An easy cell-free protein synthesis system dependent on the addition of crude Escherichia coli tRNA

scientific article published on 01 January 2000

An efficient mammalian cell-free translation system supplemented with translation factors

scientific article

An efficient unnatural base pair for PCR amplification

scientific article published on 21 November 2007

An efficient unnatural base pair for a base-pair-expanded transcription system

scientific article published in June 2005

An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system

scientific article

An extended DNA structure through deoxyribose-base stacking induced by RecA protein

scientific article

An improved cell-free system for picornavirus synthesis

scientific article published on 23 February 2007

An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing

scientific article published on 28 November 1997

An open-and-shut case? Recent insights into the activation of EGF/ErbB receptors

scientific article (publication date: September 2003)

An operational RNA code for amino acids and possible relationship to genetic code

scientific article published on October 1993

An unnatural base pair for efficient incorporation of nucleotide analogs into RNAs ⬇️

scientific article published on 01 January 2003

An unnatural base pair for incorporating amino acid analogs into proteins

scientific article

An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules

scientific article (publication date: 10 December 2008)

An unnatural base pair system for in vitro replication and transcription

An unnatural hydrophobic base pair system: site-specific incorporation of nucleotide analogs into DNA and RNA

scientific article (publication date: September 2006)

An unnatural hydrophobic base pair with shape complementarity between pyrrole-2-carbaldehyde and 9-methylimidazo[(4,5)-b]pyridine

scientific article published in May 2003

An unnatural hydrophobic base, 4-propynylpyrrole-2-carbaldehyde, as an efficient pairing partner of 9-methylimidazo[(4,5)-b]pyridine.

scientific article

Analysis of the role of Aurora B on the chromosomal targeting of condensin I.

scientific article published on 28 March 2007

Anti-(Raf-1) RNA aptamers that inhibit Ras-induced Raf-1 activation.

scientific article published on January 2002

Application of plug-plug technique to ACE experiments for discovery of peptides binding to a larger target protein: A model study of calmodulin-binding fragments selected from a digested mixture of reduced BSA

article

Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

scientific article

Arabidopsis HDA6 is required for freezing tolerance

scientific article published in 2011

Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1

scientific article

Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase

scientific article

Augmentation of immune response by an analog of the antigenic peptide in a human T-cell clone recognizing mutated Ras-derived peptides

article

Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm

scientific article published on 26 November 2008

Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.

scientific article

Automated system for high-throughput protein production using the dialysis cell-free method

scientific article published on 5 August 2009

Autoprocessing mechanism of severe acute respiratory syndrome coronavirus 3C-like protease (SARS-CoV 3CLpro) from its polyproteins

scientific article published on 27 March 2013

Azatyrosine inhibits neurite outgrowth of PC12 cells induced by oncogenic Ras

scientific article published on October 1, 1992

Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: A model for homology search in homologous genetic recombination ⬇️

scientific article published on September 15, 1998

Basic Folded and Low-Populated Locally Disordered Conformers of SUMO-2 Characterized by NMR Spectroscopy at Varying Pressures†

scientific article published in 2008

Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase

scientific article published on 2 October 2013

Binding interactions of the peripheral stalk subunit isoforms from human V-ATPase

scientific article

Biochemical analysis of the N-terminal domain of human RAD54B

scientific article published on 20 August 2008

Biochemical and biophysical properties of interactions between subunits of the peripheral stalk region of human V-ATPase

scientific article

Biochemical and structural studies on the high affinity of Hsp70 for ADP

scientific article

Biochemical characterization of human ZIP13 protein: a homo-dimerized zinc transporter involved in the spondylocheiro dysplastic Ehlers-Danlos syndrome

scientific article

Biochemical evidence for the heptameric complex L10(L12)6 in the Thermus thermophilus ribosome: in vitro analysis of its molecular assembly and functional properties

scientific article published on 10 September 2008

Bioinformatics analysis and optimization of cell-free protein synthesis

scientific article

Biosynthesis of a protein containing a nonprotein amino acid by Escherichia coli: L-2-aminohexanoic acid at position 21 in human epidermal growth factor

scientific article

Bis-Heteroaryl Pyrazoles: Identification of Orally Bioavailable Inhibitors of Activin Receptor-Like Kinase-2 (R206H)

scientific article published on 01 January 2019

Blockade of inflammatory responses by a small-molecule inhibitor of the Rac activator DOCK2.

scientific article

CD and NMR studies on the conformational thermostability of 2-thioribothymidine found in the T psi C loop of thermophile tRNA

scientific article published on November 28, 1979

Cation-pi interaction in the polyolefin cyclization cascade uncovered by incorporating unnatural amino acids into the catalytic sites of squalene cyclase

scientific article

Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme

scientific article

Cell cycle-dependent phosphorylation, nuclear localization, and activation of human condensin

scientific article

Cell-Free Membrane Protein Expression

Cell-Free Protein Production for Structural Biology

Cell-Free Protein Synthesis Using S30 Extracts from RFzero Strains for Efficient Incorporation of Non-Natural Amino Acids into Proteins

scientific article published in 2019

Cell-Free Protein Synthesis for Multiple Site-Specific Incorporation of Noncanonical Amino Acids Using Cell Extracts from RF-1 Deletion E. coli Strains

scientific article published in January 2018

Cell-Free Synthesis of Membrane Proteins

Cell-free expression of protein complexes for structural biology

scientific article published on January 2014

Cell-free methods to produce structurally intact mammalian membrane proteins.

scientific article published on 28 July 2016

Cell-free production and stable-isotope labeling of milligram quantities of proteins

article

Cell-free protein synthesis system from Escherichia coli cells cultured at decreased temperatures improves productivity by decreasing DNA template degradation

scientific article published on 7 March 2008

Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction

scientific article published on 20 February 2018

Cell-free synthesis of zinc-binding proteins

article published in 2006

Cell-free translation system from Drosophila S2 cells that recapitulates RNAi

scientific article published on 23 March 2006

Cell-permeable Carboxyl-terminal p27Kip1 Peptide Exhibits Anti-tumor Activity by Inhibiting Pim-1 Kinase

scientific article

Characteristic anticodon sequences of major tRNA species from an extreme thermophile, Thermus thermophilus HB8

article

Characteristics and prediction of domain linker sequences in multi-domain proteins.

scientific article published in January 2003

Characterization and Structure of the Aquifex aeolicus Protein DUF752: A BACTERIAL tRNA-METHYLTRANSFERASE (MnmC2) FUNCTIONING WITHOUT THE USUALLY FUSED OXIDASE DOMAIN (MnmC1)

scientific article

Characterization and prediction of linker sequences of multi-domain proteins by a neural network.

scientific article

Characterization of RNA aptamers against SRP19 protein having sequences different from SRP RNA.

scientific article

Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus

scientific article

Characterization of fluorescent, unnatural base pairs

article published in 2007

Characterization of the N-oligosaccharides attached to the atypical Asn-X-Cys sequence of recombinant human epidermal growth factor receptor

scientific article published on 01 January 2000

Characterization of the Structural Difference between Active and Inactive Forms of the Ras Protein by Chemical Modification Followed by Mass Spectrometric Peptide Mapping

scientific article published in 1997

Characterization of the secondary structure of an oligonucleotide corresponding to the autocleavage site of a precursor RNA from bacteriophage T4

scientific article published on 01 August 1994

Chemical Synthesis and Properties of Conformationally Fixed Diuridine Monophosphates as Building Blocks of the RNA Turn Motif

Chemical Synthesis and Properties of an Interresidually Cyclized Uridylyl(3'-5')uridine as a model of tRNA U-Turn Structure Having a Sharp Bend

scientific article published in 1994

Chimeric receptor analyses of the interactions of the ectodomains of ErbB-1 with epidermal growth factor and of those of ErbB-4 with neuregulin

scientific article published on 01 May 2002

Cholesterol Doping Induced Enhanced Stability of Bicelles

Circular dichroism analyses of tRNA X protein interactions

scientific article published on 01 January 1986

Cleavage effect of oligoribonucleotides substituted at the cleavage sites with modified pyrimidine- and purine-nucleosides

scientific article

Cloning and overexpression of the oah1 gene encoding O-acetyl-L-homoserine sulfhydrylase of Thermus thermophilus HB8 and characterization of the gene product

scientific article

Cloning, expression, purification, crystallization and initial crystallographic analysis of the preprotein translocation ATPase SecA from Thermus thermophilus

scientific article

Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription factor DksA from Escherichia coli

scientific article published on 26 August 2004

Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase from Geobacillus kaustophilus

scientific article published on 17 January 2007

Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of molybdopterin synthase from Thermus thermophilus HB8.

scientific article published on 30 March 2007

Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) from Pyrococcus horikoshii OT3.

scientific article

Codon reading properties of tRNA variants substituted within the anticodon loop ⬇️

scientific article published on January 1, 1997

Codon reassignment in the Escherichia coli genetic code

scientific article

Codon recognition by artificial tRNA molecules with modified nucleosides in the anticodon

scientific article published on 01 January 1997

Codon recognition by tRNA molecules with a modified or unmodified uridine at the first position of the anticodon.

scientific article

Codon-reading specificity of an unmodified form of Escherichia coli tRNA1Ser in cell-free protein synthesis.

scientific article published on August 1996

Cold denaturation of ubiquitin at high pressure

article

Combinatorial mutagenesis to restrict amino acid usage in an enzyme to a reduced set

scientific article

Combining machine learning and pharmacophore-based interaction fingerprint for in silico screening.

scientific article

Comparative expression analysis of multiple PDK genes in Xenopus laevis during oogenesis, maturation, fertilization, and early embryogenesis

scientific article published on 30 November 2008

Comparative functional analysis of CYP71AV1 natural variants reveals an important residue for the successive oxidation of amorpha-4,11-diene

article

Complete assignments of 13C NMR resonances to all the carbon atoms of the trimannosido-di-N-acetylchitobiosyl structure in a pentaantennary decasaccharide glycopeptide

scientific article published on 01 September 1995

Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses

scientific article published in June 2008

Comprehensive bioinformatics analysis of cell-free protein synthesis: identification of multiple protein properties that correlate with successful expression

scientific article published on 25 November 2009

Computer-aided NMR assay for detecting natively folded structural domains

scientific article published on 7 March 2006

Conformation change of effector-region residues in antiparallel β-sheet of human c-Ha-ras protein on GDP→GTPγS exchange: A two-dimensional NMR study

scientific article published on 01 August 1989

Conformation change of tRNAGlu in the complex with glutamyl-tRNA synthetase is required for the specific binding of L-glutamate

scientific article published on 01 November 1986

Conformation of guanosine 5'-diphosphate as bound to a human c-Ha-ras mutant protein: a nuclear Overhauser effect study

scientific article published on 01 October 1989

Conformation of ligands bound to the muscarinic acetylcholine receptor.

scientific article published in October 2002

Conformational Rigidity of N4-Acetyl-2′-O-methylcytidine Found in tRNA of Extremely Thermophilic Archaebacteria (Archaea)

Conformational aspects and functions of tRNA

Conformational characteristics of 4-acetylcytidine found in tRNA

scientific article published on 01 January 1989

Conformational distortion of sugar moieties in the RecA-bound DNA structure determined by a simulated annealing method

scientific article published on 01 January 1997

Conformational rigidity of specific pyrimidine residues in tRNA arises from posttranscriptional modifications that enhance steric interaction between the base and the 2'-hydroxyl group

scientific article published on 01 February 1992

Conformatzonal Properties of a Novel Modified Nucleoside, 5-Formylcytidine, Found at the First Position of the Anticodon of Bovine Mitochondrial tRNAMet

Conserved Neutralizing Epitope at Globular Head of Hemagglutinin in H3N2 Influenza Viruses

scientific article

Conserved protein TTHA1554 from Thermus thermophilus HB8 binds to glutamine synthetase and cystathionine beta-lyase

scientific article published on 25 April 2005

Content of intrinsic disorder influences the outcome of cell-free protein synthesis

scientific article

Contribution of E3-ubiquitin ligase activity to HIV-1 restriction by TRIM5alpha(rh): structure of the RING domain of TRIM5alpha

scientific article

Contribution of structural biology to clinically validated target proteins

scientific article published on 28 April 2008

Contributions of the N-terminal flanking residues of an antigenic peptide from the Japanese cedar pollen allergen Cry j 1 to the T-cell activation by HLA-DP5

scientific article published in 2023

Corrigendum to “Structural Snapshots of the KMSKS Loop Rearrangement for Amino Acid Activation by Bacterial Tyrosyl-tRNA Synthetase” [J. Mol. Biol. (2005) 346, 105–117]

scholarly article published in Journal of Molecular Biology

Coupled cytoplasmic transcription-and-translation--a method of choice for heterologous gene expression in Xenopus oocytes

scientific article published on 3 October 2005

Coupled transcription and translation from polymerase chain reaction-amplified DNA in Drosophila Schneider 2 cell-free system

scientific article published in February 2010

Coupled transcription-and-translation in Xenopus oocyte and egg extracts

scientific article published on 2 May 2006

CpG methylation of the CENP-B box reduces human CENP-B binding

scientific article

Crucial role of the high-loop lysine for the catalytic activity of arginyl-tRNA synthetase

scientific article published on 5 December 2000

Crystal Structural and Functional Analysis of the Putative Dipeptidase from Pyrococcus horikoshii OT3

scientific article

Crystal Structure of Epstein-Barr Virus DNA Polymerase Processivity Factor BMRF1

scientific article

Crystal Structure of Okadaic Acid Binding Protein 2.1: A Sponge Protein Implicated in Cytotoxin Accumulation

scientific article

Crystal Structure of Thermus thermophilus Δ1-Pyrroline-5-carboxylate Dehydrogenase

Crystal Structure of a Family 4 Uracil-DNA Glycosylase from Thermus thermophilus HB8 ⬇️

scientific article published on October 24, 2003

Crystal Structure of the Ca2+/Calmodulin-dependent Protein Kinase Kinase in Complex with the Inhibitor STO-609

scientific article

Crystal Structure of the interleukin-15.interleukin-15 receptor alpha complex: insights into trans and cis presentation

scientific article

Crystal Structure of the tRNA 3′ Processing Endoribonuclease tRNase Z fromThermotoga maritima

scientific article published in Journal of Biological Chemistry

Crystal and molecular structures of 2-amino-3-methylimidazo-[4,5-f]guinoline, a novel potent mutagen found in broiled food

scientific article published on 01 December 1980

Crystal structural characterization reveals novel oligomeric interactions of human voltage-dependent anion channel 1.

scientific article published on 12 June 2017

Crystal structure analysis of a hypothetical protein (MJ0366) from Methanocaldococcus jannaschii revealed a novel topological arrangement of the knot fold

scientific article published on 11 November 2016

Crystal structure analysis of ornithine transcarbamylase from Thermus thermophilus --HB8 provides insights on the plasticity of the active site

scientific article published on 22 July 2015

Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus

scientific article published on 20 April 2007

Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA

scientific article

Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus

scientific article published on 5 July 2014

Crystal structure and mutational study of a unique SpoU family archaeal methylase that forms 2'-O-methylcytidine at position 56 of tRNA

scientific article

Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis

scientific article (publication date: 8 August 2003)

Crystal structure of A3B3 complex of V-ATPase from Thermus thermophilus

scientific article

Crystal structure of Aquifex aeolicus gene product Aq1627: a putative phosphoglucosamine mutase reveals a unique C-terminal end-to-end disulfide linkage

scientific article published on 26 May 2017

Crystal structure of Deep Vent DNA polymerase

scientific article published on 4 January 2017

Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features

scientific article

Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin

scientific article

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8

scientific article

Crystal structure of RNA polymerase II from Komagataella pastoris

scientific article published on 12 April 2017

Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii

scientific article

Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP

scientific article

Crystal structure of TT1662 from Thermus thermophilus HB8: A member of the α/β hydrolase fold enzymes

scholarly article by Kazutaka Murayama published in January 2005

Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold

scientific article published on 20 August 2010

Crystal structure of TTHA0807, a CcpA regulator, from Thermus thermophilus HB8

scientific article

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

scientific article

Crystal structure of a conserved hypothetical protein TT1751 fromThermus thermophilus HB8

scholarly article by Seiichiro Kishishita published in January 2004

Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution

scientific article

Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8

scientific article

Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8

scientific article

Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution

scientific article published on 2 February 2005

Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.

scientific article published in May 2004

Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1.

scientific article

Crystal structure of an archaeal specific DNA-binding protein (Ape10b2) from Aeropyrum pernix K1.

scientific article published in May 2008

Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution

scientific article

Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5

scientific article

Crystal structure of archaeosine tRNA-guanine transglycosylase

scientific article

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

scientific article

Crystal structure of cucumisin, a subtilisin-like endoprotease from Cucumis melo L

scientific article

Crystal structure of eIF2B and insights into eIF2-eIF2B interactions

scientific article published on 14 September 2016

Crystal structure of elongation factor P from Thermus thermophilus HB8

scientific article

Crystal structure of eukaryotic translation initiation factor 2B

scientific article

Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding

scientific article

Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25 A

scientific article

Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase

scientific article

Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures

scientific article

Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation

scientific article published on 3 May 2016

Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold

scientific article

Crystal structure of human selenocysteine tRNA

scientific article

Crystal structure of hydrogenase maturating endopeptidase HycI from Escherichia coli

scientific article

Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain

scientific article

Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation

scientific article published on 19 December 2004

Crystal structure of novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8.

scientific article published on September 2005

Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus

scientific article published in April 2004

Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis

scientific article

Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8

scientific article published on 31 August 2004

Crystal structure of tRNA N2,N2-guanosine dimethyltransferase Trm1 from Pyrococcus horikoshii

scientific article

Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus

scientific article

Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine

scientific article

Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.

scientific article

Crystal structure of the Bruton's tyrosine kinase PH domain with phosphatidylinositol

scientific article

Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III ⬇️

scientific article published on July 15, 2011

Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.

scientific article

Crystal structure of the GAF-B domain from human phosphodiesterase 10A complexed with its ligand, cAMP

scientific article

Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.

scientific article published in March 2004

Crystal structure of the MarR family regulatory protein, ST1710, from Sulfolobus tokodaii strain 7

scientific article

Crystal structure of the MazG-related nucleoside triphosphate pyrophosphohydrolase from Thermotoga maritima MSB8.

scientific article

Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein

scientific article published in April 2005

Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1

scientific article (publication date: 29 April 2005)

Crystal structure of the RUN domain of the RAP2-interacting protein x

scientific journal article

Crystal structure of the alpha subunit of human translation initiation factor 2B

scientific article

Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli

scientific article

Crystal structure of the central axis DF complex of the prokaryotic V-ATPase

scientific article

Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8.

scientific article

Crystal structure of the conserved protein TT1542 fromThermus thermophilusHB8

scientific article

Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD.

scientific article

Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga

scientific article

Crystal structure of the eukaryotic translation initiation factor 2A from Schizosaccharomyces pombe

scientific article

Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB.

scientific article published on 24 August 2015

Crystal structure of the guanylate kinase domain from discs large homolog 1 (DLG1/SAP97)

scientific article

Crystal structure of the human BRD2 bromodomain: insights into dimerization and recognition of acetylated histone H4.

scientific article published on 5 December 2006

Crystal structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-A resolution

scientific article

Crystal structure of the human receptor activity-modifying protein 1 extracellular domain

scientific article

Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8

scholarly article by Motoyuki Hattori published in October 2005

Crystal structure of the manganese transport regulatory protein from Escherichia coli

scientific article

Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3.

scientific article

Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism

scientific article

Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8

scholarly article by Motoyuki Hattori published in May 2006

Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus

scientific article (publication date: 22 August 2003)

Crystal structure of thermostable DNA photolyase: Pyrimidine-dimer recognition mechanism

scientific article

Crystal structure of type I 3-dehydroquinate dehydratase of Aquifex aeolicus suggests closing of active site flap is not essential for enzyme action

scholarly article by Aribam Swarmistha Devi published in March 2013

Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins

scientific article

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii

scientific article

Crystal structures of fission yeast histone chaperone Asf1 complexed with the Hip1 B-domain or the Cac2 C terminus

scientific article

Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8

scientific article published on 30 September 2004

Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor.

scientific article

Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine

scientific article

Crystal structures of the S6K1 kinase domain in complexes with inhibitors

scientific article

Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of Sam68

scientific article

Crystal structures of the human adiponectin receptors

scientific article published on 8 April 2015

Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.

scientific article published in January 2005

Crystal structures of tyrosyl-tRNA synthetases from Archaea

scientific article

Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms

scientific article

Crystallization And Preliminary X-Ray Studies Of A Thermostable Dna Photolyase From Thermus Thermophilus Hb8

Crystallization and preliminary X-ray analysis of a DNA primase from hyperthermophilic archaeon Pyrococcus horikoshii

scientific article published on 01 December 2001

Crystallization and preliminary X-ray analysis of the archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii.

scientific article published on 25 October 2001

Crystallization and preliminary X-ray analysis of the helicase domains of Vasa complexed with RNA and an ATP analogue

scientific article published on 23 January 2004

Crystallization and preliminary X-ray crystallographic analyses of Thermus thermophilus backtracked RNA polymerase

scientific article published on 31 January 2013

Crystallization and preliminary X-ray crystallographic analysis of Aquifex aeolicus SelA, a bacterial selenocysteine synthase

scientific article published on 31 August 2012

Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1.

scientific article published on 25 December 2009

Crystallization and preliminary X-ray crystallographic analysis of bacterial tRNA(Sec) in complex with seryl-tRNA synthetase.

scientific article published on 23 May 2012

Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei

scientific article

Crystallization and preliminary X-ray crystallographic study of GenX, a lysyl-tRNA synthetase paralogue from Escherichia coli, in complex with translation elongation factor P.

scientific article

Crystallization and preliminary X-ray crystallographic study of alanyl-tRNA synthetase from the archaeon Archaeoglobus fulgidus

scientific article published on 23 February 2007

Crystallization and preliminary X-ray crystallographic study of leucyl-tRNA synthetase from the archaeonPyrococcus horikoshii

Crystallization and preliminary X-ray crystallographic study of the editing domain ofThermus thermophilusisoleucyl-tRNA synthetase complexed with pre- and post-transfer editing-substrate analogues

article

Crystallization and preliminary X-ray diffraction analysis of ribosomal protein L11 methyltransferase from Thermus thermophilus HB8

scientific article published on 25 April 2003

Crystallization and preliminary X-ray diffraction analysis of the extracellular domain of the cell surface antigen CD38 complexed with ganglioside

scientific article published on 01 February 2000

Crystallization and preliminary crystallographic analysis of T7 RNA polymerase elongation complex.

scientific article

Crystallization and preliminary crystallographic analysis of molybdenum-cofactor biosynthesis protein C from Thermus thermophilus

scientific article published on 16 December 2006

Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein from Methanocaldococcus jannaschii (MJ1044)

scientific article published on 31 January 2008

Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii

scientific article

Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions

scientific article

Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.

scientific article published on 30 May 2008

Crystallization, characterization and preliminary X-ray crystallographic analysis of GK2848, a putative carbonic anhydrase of Geobacillus kaustophilus

scientific article published on 31 January 2013

Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii

scientific article

Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA

scientific article

Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase

scientific article

Crystallographic study of a site-specifically cross-linked protein complex with a genetically incorporated photoreactive amino acid

scientific article

Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis

scientific article

Cysteine-rich region of Raf-1 interacts with activator domain of post-translationally modified Ha-Ras

scientific article

Cytoplasmic destruction of p53 by the endoplasmic reticulum-resident ubiquitin ligase 'Synoviolin'

scientific article

Cytostatic evaluations of nucleoside analogs related to unnatural base pairs for a genetic expansion system

scientific article published on 22 August 2007

DNA polymerase programmed with a hairpin DNA incorporates a multiple-instruction architecture into molecular computing

scientific article published in January 2006

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution ⬇️

scientific article published on 03 October 2012

DNA-binding of IQ, Me-IQ and Me-IQx, strong mutagens found in broiled foods.

scientific article published in December 1982

DOCK8 is a Cdc42 activator critical for interstitial dendritic cell migration during immune responses

scientific article

Decameric SelAbullettRNASec Ring Structure Reveals Mechanism of Bacterial Selenocysteine Formation

scientific article

Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme

scientific article published in April 2004

Degradation of a cAMP-binding protein is inhibited by human c-Ha-ras gene products

article

Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors

scientific article published on 12 March 2020

Development and crystallographic evaluation of histone H3 peptide with N-terminal serine substitution as a potent inhibitor of lysine-specific demethylase 1.

scientific article

Development of a Superconducting Joint for High Field NMR

article

Development of a hexahistidine-3× FLAG-tandem affinity purification method for endogenous protein complexes in Pichia pastoris

scientific article published on 15 November 2014

Development of a simple new flow cytometric antibody-dependent cellular cytotoxicity (ADCC) assay with excellent sensitivity

article

Development of an unnatural base pair for efficient PCR amplification

scientific article published in January 2007

Difference in the mechanism of interaction of Raf-1 and B-Raf with H-Ras

scientific article published on June 1996

Different Electrostatic Potentials Define ETGE and DLG Motifs as Hinge and Latch in Oxidative Stress Response

scientific article

Differential structural requirements for interaction of Ras protein with its distinct downstream effectors.

scientific article

Differentiating analogous tRNA methyltransferases by fragments of the methyl donor

scientific article

Dimerization of DOCK2 is essential for DOCK2-mediated Rac activation and lymphocyte migration.

scientific article

Dimer–Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity

scientific article

Direct inter-subdomain interactions switch between the closed and open forms of the Hsp70 nucleotide-binding domain in the nucleotide-free state

scientific article

Dissecting cell signaling pathways with genetically encoded 3-iodo-L-tyrosine

scientific article published on 29 December 2010

Distinct ways of G:U recognition by conserved tRNA binding motifs

article published in the Proceedings of the National Academy of Sciences of the United States of America

Distribution of histone H4 modifications as revealed by a panel of specific monoclonal antibodies

scientific article

Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure

scientific article

Dosage effect of minor arginyl- and isoleucyl-tRNAs on protein synthesis in an Escherichia coli in vitro coupled transcription/translation system.

scientific article published in January 2001

Double-Mutant Analysis of the Interaction of Ras with the Ras-Binding Domain of RGL†

article

Drosophila U6 promoter-driven short hairpin RNAs effectively induce RNA interference in Schneider 2 cells

scientific article

Dual Specificity of the Pyrimidine Analogue, 4-Methylpyridin-2-one, in DNA Replication

scientific article published in 2000

Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis

scientific article published on April 1, 1998

Ecto-F0/F1 ATPase as a novel candidate of prothymosin α receptor

scholarly article by Hiroshi Ueda et al published 31 May 2018 in Expert Opinion on Biological Therapy

Ectodomain structures of the CGRP and AM receptors.

scientific article published on August 2013

Effect of dielectric properties of solvents on the quality factor for a beyond 900 MHz cryogenic probe model

scientific article

Effect of modified nucleotides on Escherichia coli tRNAGlu structure and on its aminoacylation by glutamyl-tRNA synthetase. Predominant and distinct roles of the mnm5 and s2 modifications of U34

scientific article published on 01 December 1999

Effects of Escherichia coli ribosomal protein S12 mutations on cell-free protein synthesis.

scientific article published in March 2004

Efficient PCR amplification by an unnatural base pair system

scientific article

Efficient characterization for protein crystals using confocal Raman spectroscopy

scientific article published in January 2007

Efficient decoding of the UAG triplet as a full-fledged sense codon enhances the growth of a prfA-deficient strain of Escherichia coli

scientific article

Enhancing survival of mouse oocytes following chemotherapy or aging by targeting Bax and Rad51

scientific article

Enzyme Structure with Two Catalytic Sites for Double-Sieve Selection of Substrate ⬇️

scientific article published on April 24, 1998

Escherichia coli cell-free protein synthesis and isotope labeling of mammalian proteins

scientific article

Establishment of Stable hFis1 Knockdown Cells with an siRNA Expression Vector

scientific article published on 01 October 2004

Evolutionally Conserved Intermediates Between Ubiquitin and NEDD8

scientific article published on 02 August 2006

Existence of two O-like intermediates in the photocycle of Acetabularia rhodopsin II, a light-driven proton pump from a marine alga

scientific article published on March 2017

Expanded genetic code technologies for incorporating modified lysine at multiple sites

scientific article published on September 2014

Experimental determination of orientations for the 17 O electric-field-gradient and chemical shielding tensors in L-alanine

scientific article published on 30 October 2007

Expression and purification of recombinant human histones

scientific article published in May 2004

Expression of G protein coupled receptors in a cell-free translational system using detergents and thioredoxin-fusion vectors

scientific article published in May 2005

Expression, purification and X-ray analysis of 1,3-propanediol dehydrogenase (Aq_1145) from Aquifex aeolicus VF5.

scientific article

Expression, purification and characterization of isoforms of peripheral stalk subunits of human V-ATPase

scientific article

Expression, purification, and crystallization of Schizosaccharomyces pombe eIF2B.

scientific article published on 29 March 2016

Expression, purification, crystallization and preliminary X-ray diffraction analysis of galactokinase from Pyrococcus horikoshii

scientific article

Expression, purification, crystallization, and preliminary X-ray crystallographic studies of the human adiponectin receptors, AdipoR1 and AdipoR2

scientific article

Extensive Survey of Antibody Invariant Positions for Efficient Chemical Conjugation Using Expanded Genetic Codes.

scientific article published on 20 July 2017

FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure

scientific article

FGF9 monomer-dimer equilibrium regulates extracellular matrix affinity and tissue diffusion

scientific article published on 15 February 2009

Flexibility of the P-loop of Pim-1 kinase: observation of a novel conformation induced by interaction with an inhibitor

scientific article

Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes.

scientific article published on 17 January 2003

Fluorescent probing for RNA molecules by an unnatural base-pair system

scientific article (publication date: 17 August 2007)

Fluorescent properties of an unnatural nucleobase, 2-amino-6-(2-thienyl)purine, in DNA and RNA fragments

Free and ATP-bound structures of Ap4A hydrolase from Aquifex aeolicus V5

scientific article

Fully Productive Cell-Free Genetic Code Expansion by Structure-Based Engineering of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase

scientific article published on 17 March 2020

Functional analysis of factors involved in trans-translation

article

Functional and structural basis of the nuclear localization signal in the ZIC3 zinc finger domain

scientific article

Functional convergence of two lysyl-tRNA synthetases with unrelated topologies

scientific article

Functional identification of an anti-sigmaE factor from Thermus thermophilus HB8.

scientific article published on 18 July 2008

Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion

scientific article

Functions of isolated domains of methionyl-tRNA synthetase from an extreme thermophile, Thermus thermophilus HB8

scientific article published on 01 January 1987

Gaining insight into the inhibition of glycoside hydrolase family 20 exo-β-N-acetylhexosaminidases using a structural approach

scientific article

Gaussian Spectral-Density Function for Protein Internal Motions

scientific article published on 01 June 1996

Gene cloning, expression, crystallization and preliminary X-ray analysis of Thermus thermophilus arginyl-tRNA synthetase

article published in 2001

Generation of high-affinity DNA aptamers using an expanded genetic alphabet

scientific article

Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography

scientific article

Genetic encoding of non-natural amino acids in Drosophila melanogaster Schneider 2 cells

scientific article

Genetic incorporation of a photo-crosslinkable amino acid reveals novel protein complexes with GRB2 in mammalian cells

scientific article published on 23 December 2010

Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein

scientific article published on 31 August 2020

Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure

scientific article published on 13 October 2006

Genetic-code evolution for protein synthesis with non-natural amino acids

scientific article

Global Efforts in Structural Genomics

scientific article published in Science

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator

scientific article

HCV NS3 protease enhances liver fibrosis via binding to and activating TGF-β type I receptor

scientific article

Hairpin Structure of an RNA 28-mer, Which Contains a Sequence of the Enzyme Component of a Hammerhead Ribozyme System: Evidence for Tandem G: A Pairs That Are Not of Side-by-Side Type

scientific article published on 01 September 1997

High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins

scientific article published in September 2004

High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26

scientific article

Highly reproductive Escherichia coli cells with no specific assignment to the UAG codon

scientific article

Highly specific unnatural base pair systems as a third base pair for PCR amplification

scientific article

Histone H4 lysine 20 acetylation is associated with gene repression in human cells

scientific article

Holliday junction binding activity of the human Rad51B protein

scientific article

Homologous pairing and ring and filament structure formation activities of the human Xrcc2*Rad51D complex

scientific article

Homologous pairing promoted by the human Rad52 protein

scientific article published on 13 July 2001

Homologous-pairing activity of the human DNA-repair proteins Xrcc3.Rad51C

scientific article

Human Rad51 amino acid residues required for Rad52 binding.

scientific article

Human adiponectin receptor AdipoR1 assumes closed and open structures

scientific article published on 14 August 2020

Human centromere protein B induces translational positioning of nucleosomes on alpha-satellite sequences

scientific article

Hyper-thermostability of CutA1 protein, with a denaturation temperature of nearly 150 degrees C.

scientific article

IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling

scientific article published on 11 April 2018

Identification and characterization of Asef2, a guanine-nucleotide exchange factor specific for Rac1 and Cdc42

scientific article

Identification by Mn2+ rescue of two residues essential for the proton transfer of tRNase Z catalysis

scientific article published on 11 August 2006

Identification of Critical Residues in G 13 for Stimulation of p115RhoGEF Activity and the Structure of the G 13-p115RhoGEF Regulator of G Protein Signaling Homology (RH) Domain Complex

scientific article

Identification of Cyproheptadine as an Inhibitor of SET Domain Containing Lysine Methyltransferase 7/9 (Set7/9) That Regulates Estrogen-Dependent Transcription

scientific article

Identification of a function-specific mutation of clathrin heavy chain (CHC) required for p53 transactivation

scientific article published on 18 September 2009

Identification of a second DNA binding site in the human Rad52 protein

scientific article published on July 2008

Identification of amino acid residues of Ras protein that are essential for signal-transducing activity but not for enhancement of GTPase activity by GAP ⬇️

scientific article published on December 9, 1991

Identification of functional domains of the Escherichia coli SeqA protein

scientific article published on 01 January 2003

Identification of novel drug-resistant EGFR mutant inhibitors by in silico screening using comprehensive assessments of protein structures.

scientific article

Identification of promoters recognized by RNA polymerase-sigmaE holoenzyme from Thermus thermophilus HB8.

scientific article

Identification of putative domain linkers by a neural network - application to a large sequence database

scientific article published on 27 June 2006

Immune regulatory functions of DOCK family proteins in health and disease ⬇️

scientific article published on 02 August 2013

Importance of purine-pyridine hydroxyl and purine amino groups for hammerhead ribozyme cleavage

scientific article published in 1994

Importance of specific purine-pyrimidine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme

scientific article published on 01 January 1993

Improvement of domain linker prediction by incorporating loop-length-dependent characteristics

scientific article published in January 2006

Improving cell-free protein synthesis for stable-isotope labeling

scientific article

In silico functional profiling of small molecules and its applications

scientific article published in December 2008

In support of the BMRB.

scientific article published in September 2012

In vitro analysis of the initial steps of trans-translation ⬇️

scientific article published on 01 January 2003

In vitro selection of RNA aptamers that bind to colicin E3 and structurally resemble the decoding site of 16S ribosomal RNA.

scientific article published in March 2004

In vitro trans-translation of Thermus thermophilus: ribosomal protein S1 is not required for the early stage of trans-translation

scientific article published on 13 February 2007

Incorporation of a Doubly Functionalized Synthetic Amino Acid into Proteins for Creating Chemical and Light-Induced Conjugates

scientific article published in December 2015

Increased Ras expression and caspase-independent neuroblastoma cell death: possible mechanism of spontaneous neuroblastoma regression

scientific article published on 01 March 2002

Indolmycin resistance of Streptomyces coelicolor A3(2) by induced expression of one of its two tryptophanyl-tRNA synthetases ⬇️

scientific article published on 22 April 2002

Inducible protein expression in Drosophila Schneider 2 cells using the lac operator-repressor system

scientific article

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm

scientific article

Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G

scientific article

Inhibition of cathepsin L-induced degradation of epidermal growth factor receptors by c-Ha-ras gene products

scientific article published on 01 February 1988

Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding

scientific article published on 6 April 2016

Inhibitor-bound structures of human pyruvate dehydrogenase kinase 4

scientific article

Inhibitory effect of a dimerization-arm-mimetic peptide on EGF receptor activation

scientific article published on 23 April 2009

Integrated database of information from structural genomics experiments

scientific article published on 19 April 2013

Interaction analysis between tmRNA and SmpB from Thermus thermophilus

scientific article published in December 2005

Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase.

scientific article published on 6 May 2008

Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly

scientific journal article

Interactions of the Amino Acid Residue at Position 31 of the c-Ha-Ras Protein with Raf-1 and RalGDS ⬇️

scientific article published on March 27, 1998

Interhelical interactions between D92 and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the proton transport of Acetabularia rhodopsin II.

scientific article published on 11 April 2018

Intermolecular31P−15N and31P−1H Scalar Couplings Across Hydrogen Bonds Formed between a Protein and a Nucleotide

scientific article published in 2000

Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation

scientific article

Investigating the Roles of the C-Terminal Domain of Plasmodium falciparum GyrA

scientific article

Ion binding and selectivity of the rotor ring of the Na+-transporting V-ATPase.

scholarly article

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

scientific article published on 06 August 2018

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

scientific article

Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002.

scientific article

Knocking out a specific tRNA species within unfractionated Escherichia coli tRNA by using antisense (complementary) oligodeoxyribonucleotides.

scientific article

L-Asparagine

article

Lessons from structural genomics

scientific article (publication date: 2009)

Let-7 microRNA-mediated mRNA deadenylation and translational repression in a mammalian cell-free system

scientific article

Letter to the Editor: Backbone 1H, 13C and 15N resonance assignments for the Mg2+-bound form of the Ca2+-binding photoprotein aequorin

Letter to the Editor: NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES

Local conformational transition of Hydrogenobacter thermophilus cytochrome c552 relevant to its redox potential.

scientific article

Loose binding of the DF axis with the A3B3 complex stimulates the initial activity of Enterococcus hirae V1-ATPase

scientific article

Lysine-specific demethylase 2 suppresses lipid influx and metabolism in hepatic cells

scientific article published on 26 January 2015

Major identity determinants in the "augmented D helix" of tRNA(Glu) from Escherichia coli.

scientific article

Mammalian GW182 contains multiple Argonaute-binding sites and functions in microRNA-mediated translational repression

scientific article published on 27 April 2009

Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II

scientific article

Mathematical model for empirically optimizing large scale production of soluble protein domains

scientific article

Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.

scientific article

Mechanisms of molecular recognition of tRNAs by aminoacyl-tRNA synthetases ⬇️

scientific article published on January 1, 1991

Mechanisms of the inhibition of reverse transcription by unmodified and modified antisense oligonucleotides

scientific article published on 01 January 1993

Meningococcal PilV potentiates Neisseria meningitidis type IV pilus-mediated internalization into human endothelial and epithelial cells

scientific article

Methyl transfer by substrate signaling from a knotted protein fold

scientific article

MicroRNA-Mediated Deadenylation in a Mammalian Cell-Free System

MicroRNA-mediated mRNA deadenylation and repression of protein synthesis in a mammalian cell-free system

scientific article published on January 2010

Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)

scientific article

Modified Nucleosides in the First Positions of the Anticodons of tRNA and tRNA fromEscherichia coli†

article by Nobuyuki Horie et al published January 1999 in Biochemistry

Molecular basis of RNA polymerase promoter specificity switch revealed through studies of Thermus bacteriophage transcription regulator

scientific article

Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids

scientific article

Molecular cloning and expression analysis of PDK family genes in Xenopus laevis reveal oocyte-specific PDK isoform

scientific article

Molecular computation by DNA hairpin formation.

scientific article published in May 2000

Molecular conformations and codon recognition of transfer ribonucleic acids as analyzed by nuclear magnetic resonance

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides

scientific article published in May 2003

Molecular pathogenesis of spondylocheirodysplastic Ehlers-Danlos syndrome caused by mutant ZIP13 proteins

scientific article

Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli.

scientific article

Molecular structure of Q nucleotide ⬇️

scientific article published on January 1, 1979

Monitoring the site-specific incorporation of dual fluorophore-quencher base analogues for target DNA detection by an unnatural base pair system

scientific article

Multiangular method for analysing molecular geometry from nuclear Overhauser effect results

Multiple Functions of Glutamate Uptake via Meningococcal GltT-GltM L-Glutamate ABC Transporter in Neisseria meningitidis Internalization into Human Brain Microvascular Endothelial Cells

scientific article

Multiple Site-Specific Installations ofNε-Monomethyl-L-Lysine into Histone Proteins by Cell-Based and Cell-Free Protein Synthesis

scientific article published in 2014

Multiple post-translational modifications affect heterologous protein synthesis

scientific article

Multistep engineering of pyrrolysyl-tRNA synthetase to genetically encode N(epsilon)-(o-azidobenzyloxycarbonyl) lysine for site-specific protein modification

scientific article

Mutagenic metabolites in urine and feces of rats fed with 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline, a carcinogenic mutagen present in cooked meat.

scientific article published on February 1987

Mutant LV(476-7)AA of A-subunit of Enterococcus hirae V1-ATPase: High affinity of A3B3 complex to DF axis and low ATPase activity

scientific article published on 27 December 2013

Mutational analyses of the human Rad51-Tyr315 residue, a site for phosphorylation in leukaemia cells

scientific article

Mutational separation of two pathways for editing by a class I tRNA synthetase.

scientific article published in February 2002

Mutations that abolish the ability of Ha-Ras to associate with Raf-1

scientific article published on 01 August 1994

N-terminally truncated GADD34 proteins are convenient translation enhancers in a human cell-derived in vitro protein synthesis system

scientific article

NMR Analyses of Structures and Functions of Modified Nucleosides in Transfer Ribonucleic Acids

NMR Lanthanoid-probe Analyses of Conformational Properties of 8,2′-S-Cycloadenosine 3′-Monophosphate in Aqueous Solution

NMR Studies of the Effects of the 5‘-Phosphate Group on Conformational Properties of 5-Methylaminomethyluridine Found in the First Position of the Anticodon ofEscherichia colitRNA4Arg†

scientific article published in 1996

NMR analyses of the conformations of L-isoleucine and L-valine bound to Escherichia coli isoleucyl-tRNA synthetase

scientific article published on 01 October 1987

NMR analyses on the molecular mechanism of the conformational rigidity of 2-thioribothymidine, a modified nucleoside in extreme thermophile tRNAs

scientific article published on 01 June 1983

NMR analysis of novel ganglioside GM4 analogues containing de-N-acetyl and lactamized sialic acid: probes for searching new ligand structures for human L-selectin

NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes

scientific article published on 5 October 2010

NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

scientific article published in June 2004

NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana

scientific article published in June 2004

NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase

scientific article

NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.

scientific article

NMR solution structures of actin depolymerizing factor homology domains

scientific article

NMR structure elucidation of cyclic sialyl 6-sulfo Lewis x, a biologically dormant form of L-selectin ligand

NMR structure of the N-terminal domain of SUMO ligase PIAS1 and its interaction with tumor suppressor p53 and A/T-rich DNA oligomers

scientific article

NMR structure of ubiquitin-like domain in PARKIN: gene product of familial Parkinson's disease

scientific article (publication date: February 2003)

NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C

scientific article

NTA-mediated protein capturing strategy in screening experiments for small organic molecules by surface plasmon resonance

scientific article

Na+-mimicking ligands stabilize the inactive state of leukotriene B4 receptor BLT1.

scientific article published on 8 January 2018

Negative regulation of condensin I by CK2-mediated phosphorylation

scientific article

Neisseria meningitidis Translation Elongation Factor P and Its Active-Site Arginine Residue Are Essential for Cell Viability

scientific article

New insights into the binding mode of coenzymes: structure ofThermus thermophilusΔ1-pyrroline-5-carboxylate dehydrogenase complexed with NADP+

scientific article

New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK)

scientific article published on 18 September 2009

Non-hydrogen-bonded base pairs for specific transcription

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

scientific article

Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator

scientific article

Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides.

scientific article

Novel method for regioselective 2'-O-methylation and its application to the synthesis of 2'-O-methyl-5-[[(carboxymethyl)amino]methyl]uridine

article

Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative

scientific article published in September 2005

Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins

scientific article

Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii

scientific article

Oligoribonucleotides containing 8-oxo-7,8-dihydroguanosine and 8-oxo-7,8-dihydro-2'-O-methylguanosine: synthesis and base pairing properties.

scientific article published on April 1998

Oncogenic Ras triggers cell suicide through the activation of a caspase-independent cell death program in human cancer cells

scientific article

Overexpression, purification, crystallization and preliminary crystallographic studies of a hyperthermophilic adenylosuccinate synthetase from Pyrococcus horikoshii OT3

scientific article published on 25 November 2011

Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from Thermus thermophilus HB8.

scientific article

PCR amplification and transcription for site-specific labeling of large RNA molecules by a two-unnatural-base-pair system

scientific article

Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel β4 subunit explain its role in cell-cell adhesion

scientific article published on 27 June 2017

Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain

scientific article (publication date: March 2003)

Partial Purification and Characterization of a CAAX-Motif--Specific Protease from Bovine Brain Using a Novel Fluorometric Assay ⬇️

scientific article published on August 1, 1997

Patent protection for protein structure analysis

scientific article published in January 2004

Phenothiazine and carbazole-related compounds inhibit mitotic kinesin Eg5 and trigger apoptosis in transformed culture cells

scientific article published on 24 May 2006

Phosphorothioate oligonucleotides block reverse transcription by the Rnase H activity associated with the HIV-1 polymerase

scientific article published on June 1995

Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression.

scientific article

Phosphorylation analysis of 90 kDa heat shock protein within the cytosolic arylhydrocarbon receptor complex

scientific journal article

Phosphoserine aminoacylation of tRNA bearing an unnatural base anticodon

scientific article published on 27 May 2008

Photo-cross-linked small-molecule microarrays as chemical genomic tools for dissecting protein-ligand interactions

scientific article published in December 2006

Photochemistry ofAcetabulariaRhodopsin II from a Marine Plant,Acetabularia acetabulum

article

Plasma-Assisted Biological Macromolecular Crystallization

scholarly article by Tsuyohito Ito et al published 8 February 2011 in Applied Physics Express

Polyamines protect nucleic acids against depurination

scientific article published on 9 April 2018

Positive role of the mammalian TBPIP/HOP2 protein in DMC1-mediated homologous pairing.

scientific article published on 10 June 2004

Posttranscriptional control of protein synthesis in Drosophila S2 cell-free system

scientific article published on January 2014

Potentiation of cysteine proteinase-inhibitor activity of full-length Ha-ras oncogene products by denaturation-renaturation.

scientific article

Prediction of ligand-induced structural polymorphism of receptor interaction sites using machine learning.

scientific article published on 15 February 2013

Preferential binding to branched DNA strands and strand-annealing activity of the human Rad51B, Rad51C, Rad51D and Xrcc2 protein complex

scientific article

Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8

scientific article published on 28 April 2007

Preparation of Escherichia coli cell extract for highly productive cell-free protein expression

scientific article published in January 2004

Present Status of 920 MHz High-Resolution NMR Spectrometers

Pressure-jump NMR study of dissociation and association of amyloid protofibrils

Production of functional bacteriorhodopsin by an Escherichia coli cell-free protein synthesis system supplemented with steroid detergent and lipid

scientific article published on October 2009

Professor Tatsuo Miyazawa: from molecular structure to biological function

scientific article published in December 2010

Promoter-specific function of the TATA element in undifferentiated P19 cells

scientific article published on October 2003

Protein photo-cross-linking in mammalian cells by site-specific incorporation of a photoreactive amino acid

scientific article published on 17 February 2005

Protein production and purification

scientific article

Protein stabilization utilizing a redefined codon

scientific article

ProteoMix: an integrated and flexible system for interactively analyzing large numbers of protein sequences

scientific article published on 22 April 2004

Proton NMR study of triantennary complex type N-linked glycan chains: assignment of proton chemical shifts of the beta-Man residue in a basic unit of the triantennary glycan chain having a GlcNAc beta 1-->6 Man alpha 1-->6 Man beta-->sequence

scientific article published on 01 February 1997

Purification and characterization of glutamyl-tRNA synthetase from an extreme thermophile, Thermus thermophilus HB8

scientific article published on 01 November 1984

Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme fromThermus thermophilus

article

Purification, crystallization and preliminary X-ray crystallographic analysis of ST1022, a putative member of the Lrp/AsnC family of transcriptional regulators isolated from Sulfolobus tokodaii strain 7

scientific article published on 24 October 2007

Purification, crystallization and preliminary X-ray diffraction analysis of the Kelch-like motif region of mouse Keap1

scientific article

Purification, crystallization and preliminary X-ray diffraction analysis of the histone chaperone cia1 from fission yeast

scientific article

Purification, crystallization and preliminary X-ray diffraction analysis of the non-ATPase subunit Nas6 in complex with the ATPase subunit Rpt3 of the 26S proteasome from Saccharomyces cerevisiae

scientific article published on 10 February 2007

Purification, crystallization and preliminary X-ray diffraction analysis of the putative ABC transporter ATP-binding protein from Thermotoga maritima

scientific article published on 17 May 2008

Purification, crystallization and preliminary X-ray diffraction of the C-terminal bromodomain from human BRD2.

scientific article published on 22 June 2007

Purification, crystallization and preliminary X-ray diffraction study of human ribosomal protein L10 core domain

scientific article published on 24 October 2007

Questionable expression of unstable DQ heterodimer containing HLA-DQA1*01:07.

scientific article published on 9 November 2015

RAD51 plays a crucial role in halting cell death program induced by ionizing radiation in bovine oocytes.

scientific article published on 19 March 2012

RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing

scientific article

RIKEN aids international structural genomics efforts

scientific article published in January 2007

RING domain mutations uncouple TRIM5α restriction of HIV-1 from inhibition of reverse transcription and acceleration of uncoating

scientific article published on 23 November 2011

RNA aptamers that bind to and inhibit the ribosome-inactivating protein, pepocin

scientific article published on 01 February 2000

RNA aptamers that specifically bind to the Ras-binding domain of Raf-1

scientific article published on 01 December 1998

RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus

scientific article

Raf/MAPK and rapamycin-sensitive pathways mediate the anti-apoptotic function of p21Ras in IL-3-dependent hematopoietic cells

Ratcheting of RNA polymerase toward structural principles of RNA polymerase operations

scientific article

Rate of transacylation between 2' and 3'-O-L-phenylalanyladenosine

scientific article published on 01 September 1981

Rational evolution of a novel type of potent and selective proviral integration site in Moloney murine leukemia virus kinase 1 (PIM1) inhibitor from a screening-hit compound

scientific article

Real-time imaging of histone H4K12-specific acetylation determines the modes of action of histone deacetylase and bromodomain inhibitors

scientific article

Reassignment of a rare sense codon to a non-canonical amino acid in Escherichia coli

scientific article

Receptor-binding affinities of human epidermal growth factor variants having unnatural amino acid residues in position 23.

scientific article published on June 1994

Recognition of UUN codons by two leucine tRNA species from Escherichia coli.

scientific article

Recognition of non-alpha-amino substrates by pyrrolysyl-tRNA synthetase

scientific article

Recognition of tRNA identity determinants by aminoacyl-tRNA synthetases

scientific article published on 01 January 1990

Recognition of the Anticodon Loop of tRNAIle1by Isoleucyl-tRNA Synthetase fromEscherichia coli

article published in 1994

Recognition of the Nucleoside in the First Position of the Anticodon of Isoleucine tRNA by Isoleucyl-tRNA Synthetase from Escherichia Coli

scholarly article by Tomonari Muramatsu et al published February 1992 in Nucleosides & nucleotides

Reconstitution in vitro of the catalytic portion (NtpA3-B3-D-G complex) of Enterococcus hirae V-type Na+-ATPase

scientific article published on 13 October 2009

Reconstitution of Src-dependent phospholipase Cgamma phosphorylation and transient calcium release by using membrane rafts and cell-free extracts from Xenopus eggs

scientific article published on 7 July 2003

Reconstitution of eukaryotic translation initiation factor 3 by co-expression of the subunits in a human cell-derived in vitro protein synthesis system

scientific article published on 11 October 2012

Reconstitution reveals the functional core of mammalian eIF3

scientific article

Region and amino acid residues required for Rad51C binding in the human Xrcc3 protein.

scientific article published on July 2003

Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein

scientific article

Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry

scientific article published in January 2006

Regulation of Src kinase activity during Xenopus oocyte maturation

scientific article

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

article by Anna Perederina et al published August 2004 in Cell

Relation between functions and conformational characteristics of modified nucleosides found in tRNAs ⬇️

scientific article published on January 1, 1991

Removing tRNA from a cell-free protein synthesis system for use in protein production.

scientific article

Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis.

scientific article

Role of the N-terminal domain of the human DMC1 protein in octamer formation and DNA binding

scientific article

Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons ⬇️

scientific article published on November 15, 2003

Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family

scientific article published on 6 January 2005

Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures

scientific article

SARS-CoV 3CL protease cleaves its C-terminal autoprocessing site by novel subsite cooperativity.

scientific article published on 31 October 2016

ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators

scientific article

STRUCTURE AND CHEMICAL SYNTHESIS OF ME-IQ, A POTENT MUTAGEN ISOLATED FROM BROILED FISH

article

STRUCTURE OF A POTENT MUTAGEN ISOLATED FROM FRIED BEEF

Selective deuteration of RNA for NMR signal assignment

scientific article published on 01 January 1995

Selenomethionine incorporation into a protein by cell-free synthesis

scientific article

Sequence-specific 1H and 15N resonance assignments and secondary structure of GDP-bound human c-Ha-Ras protein in solution.

scientific article published on March 1993

Sequence-specific cleavage of oligoribonucleotide capable of forming a stem and loop structure.

scientific article published in August 1994

Sequences around the unnatural base pair in DNA templates for efficient replication

scientific article

Shifted positioning of the anticodon nucleotide residues of amber suppressor tRNA species by Escherichia coli arginyl-tRNA synthetase

scientific article published on 01 December 2001

Simple preparation of biotinylated RNA by transcription via an unnatural base pair ⬇️

scientific article published on 01 January 2003

Simplification of the genetic code: restricted diversity of genetically encoded amino acids

scientific article

Site-Specific Functionalization of Proteins by Organopalladium Reactions

scholarly article by Koichiro Kodama published in January 2007

Site-Specific Incorporation of Unnatural Amino Acids into Proteins in Mammalian Cells

Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs

scientific article

Site-specific fluorescent labeling of RNA by a base-pair expanded transcription system

scientific article published on 01 January 2004

Site-specific fluorescent labeling of RNA molecules by specific transcription using unnatural base pairs

scientific article

Site-specific fluorescent probing of RNA molecules by unnatural base-pair transcription for local structural conformation analysis

scientific article published on 24 June 2010

Site-specific incorporation of 4-iodo-L-phenylalanine through opal suppression

scientific article published on 21 May 2010

Site-specific incorporation of a photo-crosslinking component into RNA by T7 transcription mediated by unnatural base pairs

scientific article published in January 2004

Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells.

scientific article

Site-specific incorporation of fluorescent probes into RNA by specific transcription using unnatural base pairs

scientific article published on January 2005

Site-specific incorporation of functional components into RNA by transcription using unnatural base pair systems

scientific article published in January 2009

Site-specific incorporation of non-natural amino acids into proteins in mammalian cells with an expanded genetic code

Site-specific incorporation of photofunctional nonnatural amino acids into a polypeptide through in vitro protein biosynthesis.

scientific article

Slow transacylation of peptidyladenosine allows analysis of the 2'/3'-isomer specificity of peptidyltransferase.

scientific article

Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich AscidianAscidiasydneiensis samea

scholarly article by Toshiyuki Hamada et al published March 2005 in Journal of the American Chemical Society

Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65

scientific article

Solution structure of a BolA-like protein from Mus musculus

scientific article

Solution structure of an Arabidopsis WRKY DNA binding domain

scientific article

Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron

scientific article

Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form

scientific article

Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain

scientific article

Solution structure of ribosomal protein L16 from Thermus thermophilus HB8.

scientific article published in December 2004

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1

scientific article

Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein

scientific article

Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1)

scientific article

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

scientific article

Solution structure of the PWWP domain of the hepatoma-derived growth factor family

scientific journal article

Solution structure of the RNA binding domain in the human muscleblind-like protein 2

scientific article

Solution structure of the RWD domain of the mouse GCN2 protein

scientific article published on August 2004

Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)

scientific article

Solution structure of the SWIRM domain of human histone demethylase LSD1

scientific article

Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.

scientific article published in April 2005

Solution structure of the antifreeze-like domain of human sialic acid synthase

scientific article

Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality

scientific article

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily

scientific article

Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4.

scientific article published on 24 September 2008

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment

scientific article (publication date: February 2017)

Solution structure of the general transcription factor 2I domain in mouse TFII-I protein

scientific article

Solution structure of the human parvulin-like peptidyl prolyl cis/trans isomerase, hPar14

scientific article

Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.

scientific article

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.

scientific article published in April 2005

Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold

scientific article published in August 2005

Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana

scientific article

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode

scientific article

Solution structure of the splicing factor motif of the human Prp18 protein

scholarly article by Fahu He published in December 2011

Solution structure of the zinc finger HIT domain in protein FON

scientific article

Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT.

scientific article published on 24 March 2015

Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP.

scientific article

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

scientific article

Solution structures of the first and second RNA-binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF(65))

scientific article

Special issue: big data analyses in structural and functional genomics

scientific article published on 6 January 2017

Specific inactivation of Escherichia coli tRNA(Phe) by antisense DNA-treatment under Mg2+-deficient conditions

scientific article published on 01 March 2000

Spin-labeling proton NMR study on aromatic amino acid residues in the guanine nucleotide binding site of human c-Ha-ras(1-171) protein

scientific article published on 01 November 1989

Stabilization due to dimer formation of phosphoribosyl anthranilate isomerase from Thermus thermophilus HB8: X-ray Analysis and DSC experiments

scientific article published in May 2005

State transitions by molecules

scientific article published on 01 October 1999

Stimulation of DNA strand exchange by the human TBPIP/Hop2-Mnd1 complex

scientific article

Stimulation of Dmc1-mediated DNA strand exchange by the human Rad54B protein

scientific article

Structural Aspects of RbfA Action during Small Ribosomal Subunit Assembly

scientific article

Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain

scientific article

Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase

scientific article published on 25 April 2019

Structural Basis for Sequence-specific DNA Recognition by an Arabidopsis WRKY Transcription Factor

scientific article

Structural Characterization of the Ribosome Maturation Protein, RimM

scientific article

Structural Evidence for Loose Linkage between Ligand Binding and Kinase Activation in the Epidermal Growth Factor Receptor

scientific article

Structural Mechanism for Light-driven Transport by a New Type of Chloride Ion Pump, Nonlabens marinus Rhodopsin-3.

scientific article published on 30 June 2016

Structural analysis of the complex of Keap1 with a prothymosin α peptide

scientific article

Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein

scientific article

Structural and functional analyses of the DMC1-M200V polymorphism found in the human population

scientific article

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway

scientific article

Structural and functional differences of SWIRM domain subtypes

scientific article

Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase

scholarly article

Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase

scientific article

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus

scientific article published in July 2004

Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase

scientific article

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

scientific article (publication date: 21 April 2006)

Structural basis for amino acid and tRNA recognition by class I aminoacyl-tRNA synthetases.

scientific article

Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase

scientific article

Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5'-rUUGGCG-3' motif in the loop sequence

scientific article published on 01 May 1998

Structural basis for compound C inhibition of the human AMP-activated protein kinase α2 subunit kinase domain

scientific article

Structural basis for controlling the dimerization and stability of the WW domains of an atypical subfamily

scientific article published on 18 June 2008

Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin.

scientific article published on 20 September 2016

Structural basis for extracellular interactions between calcitonin receptor-like receptor and receptor activity-modifying protein 2 for adrenomedullin-specific binding

scientific article

Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA

scientific article

Structural basis for histone H3 Lys 27 demethylation by UTX/KDM6A

scientific article

Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors

scientific article

Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.

scientific article

Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms

scientific article

Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain

scientific article published on 21 June 2005

Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.

scientific article

Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion

scientific article (publication date: June 2003)

Structural basis for promoter specificity switching of RNA polymerase by a phage factor

scientific article

Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

scientific article

Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase

scientific article

Structural basis for substrate selection by t7 RNA polymerase.

scientific article published in February 2004

Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor

scientific article

Structural basis for the dual RNA-recognition modes of human Tra2-  RRM

scientific article

Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases

scientific article

Structural basis for the major role of O-phosphoseryl-tRNA kinase in the UGA-specific encoding of selenocysteine

scientific article

Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome

scientific article

Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase

scientific article

Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2

scientific article

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

scientific article

Structural basis for the slow photocycle and late proton release in Acetabularia rhodopsin I from the marine plant Acetabularia acetabulum

scientific article

Structural basis for the specific recognition of the major antigenic peptide from the Japanese cedar pollen allergen Cry j 1 by HLA-DP5.

scientific article published on 11 July 2014

Structural basis for transcription regulation by alarmone ppGpp.

scientific article

Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins

scientific article

Structural basis of interleukin-5 dimer recognition by its α receptor

scientific article

Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion

scientific article

Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP.

scientific article published on 13 February 2018

Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine

scientific article published in December 2007

Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer

scientific article

Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.

scientific article

Structural basis of transcription by bacterial and eukaryotic RNA polymerases ⬇️

scientific article published on December 10, 2011

Structural implications for K5/K12-di-acetylated histone H4 recognition by the second bromodomain of BRD2

scientific article

Structural insight into RNA recognition motifs: versatile molecular Lego building blocks for biological systems

scientific article published on 25 January 2012

Structural insight into the interaction of ADP-ribose with the PARP WWE domains

scientific article published on 22 September 2012

Structural insight into the zinc finger CW domain as a histone modification reader

scientific article

Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal

scientific article

Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea

scientific article

Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus

scientific article

Structural insights into the similar modes of Nrf2 transcription factor recognition by the cytoplasmic repressor Keap1.

scientific article published on 18 April 2008

Structural similarity between histone chaperone Cia1p/Asf1p and DNA-binding protein NF-kappaB.

scientific article

Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase

scientific article

Structurally designed trans-2-phenylcyclopropylamine derivatives potently inhibit histone demethylase LSD1/KDM1

scientific article

Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity

scientific article published in January 2009

Structure of SurE protein fromAquifex aeolicusVF5 at 1.5 Å resolution

scientific article

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

scientific article

Structure of a UPF0150-family protein fromThermus thermophilusHB8

scientific article

Structure of a conserved CoA-binding protein synthesized by a cell-free system

scientific article

Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution

scientific article

Structure of a putative β-phosphoglucomutase (TM1254) fromThermotoga maritima

scientific article

Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability

scientific article

Structure of an N-terminally truncated selenophosphate synthetase fromAquifex aeolicus

scientific article

Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis

scientific article

Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase

scientific article

Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate

scientific article

Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis

scientific article

Structure of dihydrodipicolinate synthase fromMethanocaldococcus jannaschii

scientific article

Structure of glyceraldehyde-3-phosphate dehydrogenase from the archaeal hyperthermophileMethanocaldococcus jannaschii

scientific article

Structure of human ubiquitin-conjugating enzyme E2 G2 (UBE2G2/UBC7)

scientific article

Structure of hypothetical Mo-cofactor biosynthesis protein B (ST2315) fromSulfolobus tokodaii

scientific article

Structure of nondiscriminating glutamyl-tRNA synthetase from Thermotoga maritima

scientific article

Structure of putative 4-amino-4-deoxychorismate lyase fromThermus thermophilusHB8

scientific article

Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs

scientific article

Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii

scientific article

Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode

scientific article

Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry

scientific article

Structure of the Rho-specific guanine nucleotide-exchange factor Xpln

scientific article

Structure of the UNC5H2 death domain

scientific article published on 23 November 2006

Structure of the complete elongation complex of RNA polymerase II with basal factors.

scientific article

Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form

scientific article

Structure of the hypothetical DUF1811-family protein GK0453 fromGeobacillus kaustophilusHTA426

scientific article

Structure of the minimized α/β-hydrolase fold protein fromThermus thermophilusHB8

scientific article

Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome

scientific article

Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion

scientific article

Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase

scientific article

Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8.

scientific article

Structure ofD-lactate dehydrogenase fromAquifex aeolicuscomplexed with NAD+and lactic acid (or pyruvate)

scientific article

Structure ofPseudomonas aeruginosaHfq protein

article

Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5' Splice Site RNA Sequence

scientific article

Structure, dynamics, and function of RNA modification enzymes

scientific article published on 05 June 2008

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

scientific article

Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8.

scientific article

Structure-based site-directed photo-crosslinking analyses of multimeric cell-adhesive interactions of voltage-gated sodium channel β subunits

scientific article published on 24 May 2016

Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains

scientific article published on 03 January 2008

Structures and functions of proteins and nucleic acids in protein biosynthesis

Structures and reaction mechanisms of the two related enzymes, PurN and PurU

scientific article

Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine

scientific article

Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8

scientific article

Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives

scientific article

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

scientific article published on January 2011

Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2

scientific article

Study of Joint Resistance in ${\hbox{Nb}}_{3}{\hbox{Al-NbTi}}$ Superconducting Joint for High Field NMR

scholarly article by T. Fukuzaki et al published June 2007 in IEEE Transactions on Applied Superconductivity

Study on site specific cleavage of RNA.

scientific article

Substrate recognition ability differs among various prokaryotic tRNase Zs

scientific article published in 2006

Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit

scientific article

Substrate tRNA Recognition Mechanism of a Multisite-specific tRNA Methyltransferase, Aquifex aeolicus Trm1, Based on the X-ray Crystal Structure

scientific article

Synthesis and Properties of Conformationally Rigid Cyclouridylic Acids Having Covalent Bonding Linkers Between the Uracil 5-Position and the 5′-Phosphate Group

Synthesis of 3-(2-deoxy-β-d-ribofuranosyl)pyridin-2-one and 2-amino-6-(N,N-dimethylamino)-9-(2-deoxy-β-d-ribofuranosyl)purine derivatives for an unnatural base pair

Synthesis of N-acetylglucosaminyl asparagine-substituted puromycin analogues

scientific article published on 01 December 1995

Synthesis of N-labeled peptidyl AMP.

scientific article

Synthesis of Uridylyl (3′-5′) Uridine Derivatives Containing 5-(Methylamino-Methyl) Uridine as A Modified Nucleoside Found fromE. COLIMinor tRNAArg

article published in 1993

Synthesis of oligonucleotide having a bent structure by incorporation of an interresidually cyclized uridylyl (3'-5')uridine unit

scientific article published on 01 January 1995

Targeting Ras-Driven Cancer Cell Survival and Invasion through Selective Inhibition of DOCK1.

scientific article

Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.

scientific article

Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation

scientific article

Tertiary structure of bacterial selenocysteine tRNA

scientific article

Tertiary structures of Escherichia coli tRNA as studied by NMR spectroscopy with 13C-labeling method

scientific article published on 01 September 1980

Tethering of proteins to RNAs using the bovine immunodeficiency virus-Tat peptide and BIV-TAR RNA.

scientific article published on 19 May 2012

Tetrameric interaction of the ectoenzyme CD38 on the cell surface enables its catalytic and raft-association activities

scientific article

The C-Terminal Domain of the Archaeal Leucyl-tRNA Synthetase Prevents Misediting of Isoleucyl-tRNAIle†

scientific article published in 2007

The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange

scientific article

The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma

scientific article

The Cdc42 binding and scaffolding activities of the fission yeast adaptor protein Scd2.

scientific article

The Escherichia coli argU10(Ts) phenotype is caused by a reduction in the cellular level of the argU tRNA for the rare codons AGA and AGG.

scientific article published on September 2004

The Meningococcal Cysteine Transport System Plays a Crucial Role in Survival in Human Brain Microvascular Endothelial Cells

article published in 2018

The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR

scientific article

The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein

scientific article

The RAC binding domain/IRSp53-MIM homology domain of IRSp53 induces RAC-dependent membrane deformation

scientific article

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

scientific article

The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation

scientific article published on 24 September 2006

The branching and linear portions of poly(adenosine diphosphate ribose) have the same alpha(1 leads to 2) ribose-ribose linkage

scientific article published on 01 March 1981

The chromosomal association of condensin II is regulated by a noncatalytic function of PP2A.

scientific article

The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation

scientific article

The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli

scientific article

The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain

scientific journal article

The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus

scientific article

The flexible arm of tRNase Z is not essential for pre-tRNA binding but affects cleavage site selection

scientific article published on 15 May 2008

The histidine transporter SLC15A4 coordinates mTOR-dependent inflammatory responses and pathogenic antibody production

scientific article published on September 2014

The identity determinants required for the discrimination between tRNAGlu and tRNAAsp by glutamyl-tRNA synthetase from Escherichia coli

scientific article published on 01 April 1999

The influence of oligodeoxyribonucleotide phosphorothioate pyrimidine strands on triplex formation

scientific article published on 01 December 1992

The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes

scientific article

The novel mutation K87E in ribosomal protein S12 enhances protein synthesis activity during the late growth phase in Escherichia coli

scientific article published on 14 February 2004

The putative DNA-binding protein Sto12a from the thermoacidophilic archaeon Sulfolobus tokodaii contains intrachain and interchain disulfide bonds

scientific article

The putative nuclear localization signal of the human RAD52 protein is a potential sumoylation site

scientific article published on 27 February 2010

The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions

scientific article

The selective tRNA aminoacylation mechanism based on a single G•U pair

scientific article

The solution structure of the pleckstrin homology domain of mouse Son-of-sevenless 1 (mSos1)

scientific article

The structure of TTHA0988 from Thermus thermophilus, a KipI-KipA homologue incorrectly annotated as an allophanate hydrolase

scientific article

The structure of an archaeal ribose-5-phosphate isomerase fromMethanocaldococcus jannaschii(MJ1603)

scientific article

The structure of putative N-acetyl glutamate kinase from Thermus thermophilus reveals an intermediate active site conformation of the enzyme

scientific article published on 20 March 2012

The structure of the flexible arm ofThermotoga maritimatRNase Z differs from those of homologous enzymes

scientific article

The zinc-binding region (ZBR) fragment of Emi2 can inhibit APC/C by targeting its association with the coactivator Cdc20 and UBE2C-mediated ubiquitylation

scientific article (publication date: 2014)

Theoretical Analysis of Activity Cliffs among Benzofuranone-Class Pim1 Inhibitors Using the Fragment Molecular Orbital Method with Molecular Mechanics Poisson-Boltzmann Surface Area (FMO+MM-PBSA) Approach.

scientific article published on 7 November 2017

Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures

scientific article published on 22 December 2007

Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR).

scientific article published on 21 March 2013

ThermusthermophilustmRNA andtranstranslation

article

Thioether Macrocyclic Peptides Selected against TET1 Compact Catalytic Domain Inhibit TET1 Catalytic Activity.

scientific article published on 17 April 2018

Three-dimensional structure of hyper-modified nucleoside Q located in the wobbling position of tRNA ⬇️

scientific article published on November 1, 1979

Time-resolved Raman and polyacrylamide gel electrophoresis observations of nucleotide incorporation and misincorporation in RNA within a bacterial RNA polymerase crystal

scientific article published on 13 January 2015

Topological analysis of MAPK cascade for kinetic ErbB signaling

scientific article

Towards the high-throughput expression of metalloproteins from the Mycobacterium tuberculosis genome

scientific article published on 23 December 2004

Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8

scientific journal article

Transformation potency of ErbB heterodimer signaling is determined by B-Raf kinase

scientific article published in June 2004

Translation of 'rare' codons in a cell-free protein synthesis system from Escherichia coli.

scientific article

Transplantation of a tyrosine editing domain into a tyrosyl-tRNA synthetase variant enhances its specificity for a tyrosine analog

scholarly article

Trichostatin A inhibits both ras-induced neurite outgrowth of PC12 cells and morphological transformation of NIH3T3 cells.

scientific article published on March 1995

Trm5 and TrmD: Two Enzymes from Distinct Origins Catalyze the Identical tRNA Modification, m¹G37.

scientific article published on 21 March 2017

Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions ⬇️

scientific article published on September 30, 2010

Two tRNAIle1 species from an extreme thermophile, Thermus thermophilus HB8: effect of 2-thiolation of ribothymidine on the thermostability of tRNA

scientific article published on 01 October 1985

Two-colored fluorescence correlation spectroscopy screening for LC3-P62 interaction inhibitors

scientific article

UTX and UTY demonstrate histone demethylase-independent function in mouse embryonic development

scientific article

Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization

scientific article

Unnatural base pairs between 2- and 6-substituted purines and 2-oxo(1H)pyridine for expansion of the genetic alphabet

scientific article published in October 2004

Unnatural base pairs mediate the site-specific incorporation of an unnatural hydrophobic component into RNA transcripts

scientific article published in May 2004

Upstream mechanisms of glycogen synthase activation by insulin and insulin-like growth factor-I. Glycogen synthase activation is antagonized by wortmannin or LY294002 but not by rapamycin or by inhibiting p21ras

scientific article published on 01 February 1995

Wide-range protein photo-crosslinking achieved by a genetically encoded N(ε)-(benzyloxycarbonyl)lysine derivative with a diazirinyl moiety

scientific article published in February 2012

X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8

scientific article

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8

scientific article

X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7

scientific article

ZF21 Protein, a Regulator of the Disassembly of Focal Adhesions and Cancer Metastasis, Contains a Novel Noncanonical Pleckstrin Homology Domain

scientific article

c-Ha-Ras mutants with point mutations in Gln-Val-Val region have reduced inhibitory activity toward cathepsin B

scientific article published on 01 May 1993

c-Ha-ras gene products are potent inhibitors of cathepsins B and L.

scientific article

l-Alanine hydrochloride monohydrate

scientific article

pCMV-Leu2/pUCA-Neo, a vector set for screening Schizosaccharomyces pombe transformants expressing heterologous proteins

scientific article published in 2011

tRNA recognition by glutamyl-tRNA reductase.

scientific article

Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus

scientific article

Paulina is supported by:

About Paulina

Help