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List of works by Armando J. Pinho

A JBIG-based approach to the encoding of contour maps

scientific article published on 01 January 2000

A genomic distance for assembly comparison based on compressed maximal exact matches.

scientific article published on May 2013

A survey on palette reordering methods for improving the compression of color-indexed images

scientific article published on 01 November 2004

A three-state model for DNA protein-coding regions.

scientific article published on November 2006

AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models

scientific article published on 27 April 2021

AC: A Compression Tool for Amino Acid Sequences

scientific article published on 05 February 2019

An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

scientific article

Analysis-Driven Lossy Compression of DNA Microarray Images.

scientific article

Comparing Reverse Complementary Genomic Words Based on Their Distance Distributions and Frequencies.

scientific article published on 6 December 2017

Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes

scientific article published on 23 May 2018

Compressing resequencing data with GReEn.

scientific article

Cryfa: A Tool to Compact and Encrypt FASTA Files

Cryfa: a secure encryption tool for genomic data

scientific article published on 01 January 2019

DNA sequences at a glance

scientific article published on 21 November 2013

DNA synthetic sequences generation using multiple competing Markov models

DNA word analysis based on the distribution of the distances between symmetric words

scientific article

Distribution of Distances Between Symmetric Words in the Human Genome: Analysis of Regular Peaks

scientific article published on 25 March 2019

ECG biometric identification: A compression based approach.

scientific article published on August 2015

Efficient Compression of Genomic Sequences

GReEn: a tool for efficient compression of genome resequencing data ⬇️

scientific article published on December 1, 2011

Genome analysis with distance to the nearest dissimilar nucleotide ⬇️

scientific article published on February 2, 2011

Genome analysis with inter-nucleotide distances.

scientific article published on 16 September 2009

Lossless compression of microarray images using image-dependent finite-context models

scientific article published on 01 February 2009

MAFCO: a compression tool for MAF files.

scientific article published on 27 March 2015

MFCompress: a compression tool for FASTA and multi-FASTA data

scientific article

Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard

article

Minimal absent words in four human genome assemblies

scientific article

Minimal absent words in prokaryotic and eukaryotic genomes

scientific article

Multimodal Emotion Evaluation: A Physiological Model for Cost-Effective Emotion Classification

scientific article published on 21 June 2020

On finding minimal absent words.

scientific article

On the Approximation of the Kolmogorov Complexity for DNA Sequences

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models ⬇️

scientific article published on June 30, 2011

On the Role of Inverted Repeats in DNA Sequence Similarity

On the use of standards for microarray lossless image compression

scientific article published on 01 March 2006

Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences

The breakdown of the word symmetry in the human genome.

scientific article published on 2 July 2013

Three minimal sequences found in Ebola virus genomes and absent from human DNA.

scientific article

Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome

scholarly article by Diogo Pratas et al published 2017 in Lecture Notes in Computer Science

XS: a FASTQ read simulator.

scientific article

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