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List of works by Diogo Pratas

A genomic distance for assembly comparison based on compressed maximal exact matches.

scientific article published on May 2013

AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models

scientific article published on 27 April 2021

An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

scientific article

Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes

scientific article published on 23 May 2018

Compressing resequencing data with GReEn.

scientific article

Cryfa: A Tool to Compact and Encrypt FASTA Files

DNA sequences at a glance

scientific article published on 21 November 2013

DNA synthetic sequences generation using multiple competing Markov models

Efficient Compression of Genomic Sequences

GReEn: a tool for efficient compression of genome resequencing data ⬇️

scientific article published on December 1, 2011

MAFCO: a compression tool for MAF files.

scientific article published on 27 March 2015

MFCompress: a compression tool for FASTA and multi-FASTA data

scientific article

Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard

article

On the Approximation of the Kolmogorov Complexity for DNA Sequences

On the Role of Inverted Repeats in DNA Sequence Similarity

Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model

scientific article published on 16 January 2020

Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences

The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features

scientific article published in 2022

Three minimal sequences found in Ebola virus genomes and absent from human DNA.

scientific article

Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome

scholarly article by Diogo Pratas et al published 2017 in Lecture Notes in Computer Science

XS: a FASTQ read simulator.

scientific article

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