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List of works by Axel Visel

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

52 Genetic Loci Influencing Myocardial Mass

scientific article

A Gene Expression Map of the Mouse Brain

article

A distal 594 bp ECR specifies Hmx1 expression in pinna and lateral facial morphogenesis and is regulated by the Hox-Pbx-Meis complex

scientific article published on 10 June 2016

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

A high-resolution enhancer atlas of the developing telencephalon

scientific article published on 31 January 2013

A liver enhancer in the fibrinogen gene cluster

scientific article published on 4 October 2010

A noncoding single-nucleotide polymorphism at 8q24 drives -mutant glioma formation

scientific article published on 7 October 2022

A single nucleotide polymorphism associated with isolated cleft lip and palate, thyroid cancer and hypothyroidism alters the activity of an oral epithelium and thyroid enhancer near FOXE1

scientific article published on 4 February 2015

A unique stylopod patterning mechanism by Shox2-controlled osteogenesis.

scientific article published on 10 June 2016

Adenylate Cyclase 1 dependent refinement of retinotopic maps in the mouse

scientific article published in December 2004

An atlas of dynamic chromatin landscapes in mouse fetal development

scientific article published on 29 July 2020

An etiologic regulatory mutation in IRF6 with loss- and gain-of-function effects.

scientific article published on 16 January 2014

Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18

scientific article published on 07 February 2020

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development

scientific article published on 10 October 2020

Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development

scientific article published on 04 January 2021

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 01 March 2020

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

scholarly article

Author Correction: Perspectives on ENCODE

scholarly article

Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

scientific article published in March 2018

CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria

scientific article published on 14 October 2019

Cardiac Reprogramming Factors Synergistically Activate Genome-wide Cardiogenic Stage-Specific Enhancers

scientific article published on 09 May 2019

ChIP-Seq identification of weakly conserved heart enhancers

scientific article

ChIP-seq accurately predicts tissue-specific activity of enhancers

scientific article (publication date: 12 February 2009)

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

scientific article

Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors

scientific article

Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog).

scientific article

Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants

scientific article published on 12 March 2020

Comprehensive analysis of the expression patterns of the adenylate cyclase gene family in the developing and adult mouse brain

scientific article

Comprehensive expression atlas of fibroblast growth factors and their receptors generated by a novel robotic in situ hybridization platform.

scientific article

Congenital heart defects in patients with deletions upstream of SOX9.

scientific article published on 18 October 2013

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 22 July 2019

De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana

scientific article

Deletion of ultraconserved elements yields viable mice

scientific article published in September 2007

Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression

scientific article

Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip

scientific article

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

scientific article

Distal Limb Patterning Requires Modulation of cis-Regulatory Activities by HOX13.

scientific article

Dlx1&2-dependent expression of Zfhx1b (Sip1, Zeb2) regulates the fate switch between cortical and striatal interneurons

scientific article published on January 2013

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

scientific article published on 27 September 2018

Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease

scientific article

Enhancer identification through comparative genomics

scientific article published on 5 January 2007

Enhancer redundancy provides phenotypic robustness in mammalian development

scientific article published on 31 January 2018

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Expanded encyclopaedias of DNA elements in the human and mouse genomes

scientific article published on 29 July 2020

Expression of the winged helix/forkhead gene, foxn4, during zebrafish development

scientific article

Fine tuning of craniofacial morphology by distant-acting enhancers

scientific article

Fishing for Function in the Human Gene Pool

scientific article published on 21 May 2016

Function-based identification of mammalian enhancers using site-specific integration

scientific article

Functional anatomy of distant-acting mammalian enhancers

scientific article

Functional autonomy of distant-acting human enhancers

scientific article published on 05 March 2009

Fuzzy GIS-based multi-criteria evaluation for USAgaveproduction as a bioenergy feedstock

article

GenePaint.org: an atlas of gene expression patterns in the mouse embryo

scientific article

Genome-wide atlas of gene expression in the adult mouse brain

scientific article

Genome-wide compendium and functional assessment of in vivo heart enhancers

scientific article published on 05 October 2016

Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons

scientific article published on 01 August 2019

Genomic perspectives of transcriptional regulation in forebrain development

scientific article published on January 2015

Genomic views of distant-acting enhancers

scientific article

Germline Chd8 haploinsufficiency alters brain development in mouse.

scientific article published on 26 June 2017

HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development

scientific article published on May 2017

HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme

scientific article

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers

scientific article

Human-specific gain of function in a developmental enhancer

scientific article published on September 2008

Identification and characterization of novel Fgf17 enhancers active in the rostral forebrain signaling center

Identification of novel craniofacial regulatory domains located far upstream of SOX9 and disrupted in Pierre Robin sequence

scientific article

Improved regulatory element prediction based on tissue-specific local epigenomic signatures

scientific article published on 13 February 2017

Large-scale discovery of enhancers from human heart tissue

scientific article published on 4 December 2011

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb.

scientific article published on 21 August 2017

Limits of sequence and functional conservation

scientific article

Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae

scientific article

Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics

scientific article published on 18 November 2021

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

scientific article (publication date: 28 January 2011)

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

scientific article

Multiple conserved regulatory domains promote Fezf2 expression in the developing cerebral cortex

scientific article

Noncoding deletions reveal a gene that is critical for intestinal function

scientific article published on 19 June 2019

Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility

scientific article published on 23 April 2015

Parkinson-Associated SNCA Enhancer Variants Revealed by Open Chromatin in Mouse Dopamine Neurons.

scientific article

Pbx Regulates Patterning of the Cerebral Cortex in Progenitors and Postmitotic Neurons

scientific article

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

scientific article published on 15 October 2015

Principles of regulatory information conservation between mouse and human

scientific article

Progressive Loss of Function in a Limb Enhancer during Snake Evolution

scientific article published on October 2016

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Rapid and pervasive changes in genome-wide enhancer usage during mammalian development

scientific article published on December 2013

Regulatory pathway analysis by high-throughput in situ hybridization

scientific article

Response to Comment on "Human-Specific Gain of Function in a Developmental Enhancer"

scientific article published in Science

Scaffolding by ERK3 regulates MK5 in development

scientific journal article

Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation.

scientific article published on 12 February 2018

Spatiotemporal DNA methylome dynamics of the developing mouse fetus

scientific article published on 29 July 2020

Stable enhancers are active in development, and fragile enhancers are associated with evolutionary adaptation

scientific article published on 15 July 2019

Stop codon reassignments in the wild

scientific article

Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate.

scientific article

Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

scientific article published on 29 July 2020

Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice

scientific article

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

scientific article published on 12 February 2016

The Epigenomic Landscape of Prokaryotes

scientific article

The FaceBase Consortium: a comprehensive program to facilitate craniofacial research

scientific article

The FaceBase Consortium: a comprehensive resource for craniofacial researchers

scientific article published on 10 June 2016

The Ties That Bind: Mapping the Dynamic Enhancer-Promoter Interactome

scientific article published on November 2016

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

scientific article published on 29 July 2020

The mole genome reveals regulatory rearrangements associated with adaptive intersexuality

scientific article

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Tissue-specific RNA expression marks distant-acting developmental enhancers

scientific article

Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

scientific article

Transcriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons

scientific article published on September 2016

Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1.

scientific article

Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex

scientific article

Transmembrane protein 50b (C21orf4), a candidate for Down syndrome neurophenotypes, encodes an intracellular membrane protein expressed in the rodent brain

scientific article published on 4 March 2008

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

scientific article

Ultraconserved Enhancers Are Required for Normal Development.

scientific article

Ultraconserved enhancer function does not require perfect sequence conservation

scientific article published on 29 March 2021

Use of "MGE enhancers" for labeling and selection of embryonic stem cell-derived medial ganglionic eminence (MGE) progenitors and neurons

scientific article

VISTA Enhancer Browser--a database of tissue-specific human enhancers

scientific article

Widespread adenine N6-methylation of active genes in fungi.

scientific article

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