List of works by José E Pérez-Ortín

A Complete Set of Nascent Transcription Rates for Yeast Genes ⬇️

scientific article published on November 16, 2010

A genome-wide transcriptional study reveals that iron deficiency inhibits the yeast TORC1 pathway

scientific article published on 05 August 2019

A genomic study of the inter-ORF distances in Saccharomyces cerevisiae

scientific article published on 01 July 2006

A genomic view of mRNA turnover in yeast

scientific article published on 05 July 2011

A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding

scientific article

A natural A/T-rich sequence from the yeast FBP1 gene exists as a cruciform in Escherichia coli cells

scientific article published on 01 May 1993

A new glucose-repressible gene identified from the analysis of chromatin structure in deletion mutants of yeast SUC2 locus

scientific article

A new set of DNA macrochips for the yeast Saccharomyces cerevisiae: features and uses.

scientific article published in September 2004

A novel approach for the improvement of stress resistance in wine yeasts

scientific article published on 20 December 2006

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

scientific article published in November 2018

A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data.

scientific article

An inverse correlation between stress resistance and stuck fermentations in wine yeasts. A molecular study

scientific article published on September 1999

Analysis of the structure of a natural alternating d(TA)n sequence in yeast chromatin

scientific article published on 01 March 1997

Arginase activity is a useful marker of nitrogen limitation during alcoholic fermentations

scientific article published in September 2003

Asymmetric cell division requires specific mechanisms for adjusting global transcription

scientific article published on 23 October 2017

Biotin-Genomic Run-On (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast.

scientific article

Bromodomain factor 1 (Bdf1) protein interacts with histones

scientific article published on 4 May 2001

CYGD: the Comprehensive Yeast Genome Database

scientific article

Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

scientific article published on 07 April 2021

Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii

scientific article published on 27 February 2009

Chromatin structure of the 5' flanking region of the yeast LEU2 gene

scientific article published on 01 June 1989

Chromatin structure of the yeast FBP1 gene: transcription-dependent changes in the regulatory and coding regions

scientific article published on 01 November 1993

Chromatin structure of the yeast SUC2 promoter in regulatory mutants

scientific article published on 01 February 1992

Chromatin structure of transposon Tn903 cloned into a yeast plasmid.

scientific article

Chromatin structure of yeast genes

scientific article

Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle

scientific article

Common gene expression strategies revealed by genome-wide analysis in yeast.

scientific article published on January 2007

Comparative transcriptomic analysis reveals similarities and dissimilarities in Saccharomyces cerevisiae wine strains response to nitrogen availability

scientific article published on 17 April 2015

Comprehensive transcriptional analysis of the oxidative response in yeast

scientific article

Corrigendum to "External conditions inversely change the RNA polymerase II elongation rate and density in yeast" [Biochim. Biophys. Acta 1829/11 (2013) 1248-1255]

scientific article published on 24 December 2016

Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast.

scientific article

DNA chips for yeast biotechnology. The case of wine yeasts

scientific article

DNase I sensitivity of the chromatin of the yeast SUC2 gene for invertase

scientific article published on 01 December 1986

Defects in the NC2 repressor affect both canonical and non-coding RNA polymerase II transcription initiation in yeast.

scientific article

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression.

scientific article published on 04 March 2013

Expression levels and patterns of glycolytic yeast genes during wine fermentation

scientific article published on 01 June 2000

External conditions inversely change the RNA polymerase II elongation rate and density in yeast.

scientific article published on 6 October 2013

Fine analysis of the chromatin structure of the yeast SUC2 gene and of its changes upon derepression. Comparison between the chromosomal and plasmid-inserted genes

scientific article

Fractionation of yeast chromatin by micrococcal nuclease digestion

scientific article published on 01 January 1986

Functional analysis of 12 ORFs fromSaccharomyces cerevisiae chromosome II

scientific article published in July 1999

Functional analysis of yeast gene families involved in metabolism of vitamins B1 and B6.

scientific article

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

scientific article

Genome-wide studies of mRNA synthesis and degradation in eukaryotes

scientific article published on 11 December 2011

Genomic insights into the different layers of gene regulation in yeast.

scientific article published on 22 November 2011

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

scientific article

Genomic-wide methods to evaluate transcription rates in yeast.

scientific article

Genomics and gene transcription kinetics in yeast

scientific article published on 26 March 2007

Genomics of mRNA turnover.

scientific article published on December 2007

Global Estimation of mRNA Stability in Yeast

scientific article published on 01 January 2011

Growth rate controls mRNA turnover in steady and non-steady states

scientific article published on 20 September 2016

HAT1 and HAT2 proteins are components of a yeast nuclear histone acetyltransferase enzyme specific for free histone H4.

scientific article

Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities

scientific article

Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability

scientific article published on 02 September 2019

Impact of high pH stress on yeast gene expression: A comprehensive analysis of mRNA turnover during stress responses

scientific article published on 18 April 2015

In vivo assembly of chromatin on pBR322 sequences cloned into yeast plasmids

scientific article published on 01 March 1989

Isolation and Characterization of an Fe(III)-Chelating Compound Produced by Pseudomonas syringae

scientific article

Measuring RNA polymerase activity genome-wide with high-resolution run-on-based methods

scientific article published on 02 February 2019

Mitochondrial inheritance and fermentative : oxidative balance in hybrids betweenSaccharomyces cerevisiaeandSaccharomyces uvarum

scientific article published on 01 July 2008

Mitotic recombination and genetic changes in Saccharomyces cerevisiae during wine fermentation

scientific article published on May 2000

Modulation of protein synthesis and degradation maintains proteostasis during yeast growth at different temperatures

scientific article published on 28 April 2017

Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains.

scientific article published on October 2002

Nonsense-mediated mRNA decay controls the changes in yeast ribosomal protein pre-mRNAs levels upon osmotic stress

scientific article

On the presence of HMG proteins in yeast

scientific article published on 01 March 1986

Partial purification and properties of two histone acetyltransferases from the yeast, Saccharomyces cerevisiae

scientific article published in May 1985

Phylogenetic analysis of the thiolase family. Implications for the evolutionary origin of peroxisomes

scientific article (publication date: August 1992)

Recruitment of Xrn1 to stress-induced genes allows efficient transcription by controlling RNA polymerase II backtracking

scientific article published on 01 December 2020

Regulon-specific control of transcription elongation across the yeast genome

scientific article

Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast.

scientific article

Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast

scientific article published on 23 October 2020

SRC1: an intron-containing yeast gene involved in sister chromatid segregation

scientific article

Saccharomyces cerevisiae glutaredoxin 5-deficient cells subjected to continuous oxidizing conditions are affected in the expression of specific sets of genes

scientific article

Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation

scientific article published on 29 June 2007

Sequencing analysis of a 4.1 kb subtelomeric region from yeast chromosome IV identifies HXT15, a new member of the hexose transporter family

scientific article published on September 1996

Sliding-end-labelling. A method to avoid artifacts in nucleosome positioning.

scientific article

Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae.

scientific article published on 15 April 2009

Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals

scientific article published on February 2000

Stochastic nucleosome positioning in a yeast chromatin region is not dependent on histone H1

scientific article published on 01 September 1999

Stress response and expression patterns in wine fermentations of yeast genes induced at the diauxic shift

scientific article published on January 2000

Structural characterization of chromosome I size variants from a natural yeast strain

scientific article published in January 2003

Study of the first hours of microvinification by the use of osmotic stress-response genes as probes.

scientific article published in April 2002

Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery

scientific article

The POT1 gene for yeast peroxisomal thiolase is subject to three different mechanisms of regulation

scientific article

The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally.

scientific article published on 29 March 2018

The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes.

scientific article published on January 2007

The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.

scientific article published on 29 December 2015

The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation.

scientific article

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors

scientific article (publication date: August 2010)

The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins

scientific article published on 21 March 2019

The importance of controlling mRNA turnover during cell proliferation

scientific article published on 23 March 2016

The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression

scientific article

The mRNA cap-binding protein Cbc1 is required for high and timely expression of genes by promoting the accumulation of gene-specific activators at promoters.

scientific article published on 13 January 2016

The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4

scientific article published on 01 October 2019

The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast

scientific article published on January 2012

The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation

scientific article published on 15 June 2017

The role of histones and their modifications in the informative content of chromatin

scientific article published on September 1993

The telomeric Cdc13-Stn1-Ten1 complex regulates RNA polymerase II transcription

scientific article published on 01 July 2019

The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast

scientific article published in February 2008

The yeast FBP1 poly(A) signal functions in both orientations and overlaps with a gene promoter

scientific article published on October 1998

There is a steady-state transcriptome in exponentially growing yeast cells

scientific article published on 01 July 2010

Topoisomerase II regulates yeast genes with singular chromatin architectures

scientific article published on 09 August 2013

Transcription termination downstream of the Saccharomyces cerevisiae FBP1 [changed from FPB1] poly(A) site does not depend on efficient 3'end processing.

scientific article

Transcriptional and structural study of a region of two convergent overlapping yeast genes

scientific article published on 01 December 1999

Transcriptional response of Saccharomyces cerevisiae to different nitrogen concentrations during alcoholic fermentation

scientific article

What do you mean by transcription rate?: the conceptual difference between nascent transcription rate and mRNA synthesis rate is essential for the proper understanding of transcriptomic analyses

scientific article published on 17 September 2013

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

scientific article published on 02 November 2020

YeastHAT1andHAT2deletions have different life-span and transcriptome phenotypes

scientific article published on 01 August 2005

mRNAStab--a web application for mRNA stability analysis.

scientific article published on 25 January 2013

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